View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5788_low_9 (Length: 384)
Name: NF5788_low_9
Description: NF5788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5788_low_9 |
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| [»] scaffold0147 (1 HSPs) |
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Alignment Details
Target: scaffold0147 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: scaffold0147
Description:
Target: scaffold0147; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 17 - 376
Target Start/End: Complemental strand, 18631 - 18267
Alignment:
| Q |
17 |
gatagatgatagttctctgtttgtacagctagagaatgtgcatcgccatatagagcggtactttgtgagattccggaaccttttgggacctgctaatagg |
116 |
Q |
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| T |
18631 |
gatagatgatagttctctgtttgtacagctagagaatgtgcatcgccatatagagcggtactttgtgagattccggaaccttttgggacctgctaatagg |
18532 |
T |
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| Q |
117 |
agatatattcaaactctgatggtccttatacaagcatttcttcgagtactactaaatgagaaagatggaaatctcatggattcatgccgtgataccgagc |
216 |
Q |
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| T |
18531 |
agatatattcaaactctgatggtccttatacaagcatttctccgagtactagtaaatgagaaagatggaaatctcatggattcatgccgtgatacagaac |
18432 |
T |
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| Q |
217 |
aggcttctgaagaaaggagagcctccgattttactatggccatcaatgattttgtatttgaactaaatattgacaatatcaacttggtcaaattgctaac |
316 |
Q |
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| T |
18431 |
aggcttctgaagaaaggagagcctccgattttactatggccatcaatgattttgtatttgaactaaatattgataatatcaacttggtcaaattgctaac |
18332 |
T |
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| Q |
317 |
atacataaaggaaagcaatatcatgcacaaggt-----tcgctactaaatattttaatattcttc |
376 |
Q |
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| T |
18331 |
gtacataaaggaaagcaatatcatgcacaaggtgaatctcgctactaaatattttaattttcttc |
18267 |
T |
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