View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5789-Insertion-1 (Length: 950)

Name: NF5789-Insertion-1
Description: NF5789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5789-Insertion-1
NF5789-Insertion-1
[»] chr4 (2 HSPs)
chr4 (64-950)||(21591895-21592769)
chr4 (554-619)||(2171740-2171805)
[»] chr6 (5 HSPs)
chr6 (531-593)||(7263001-7263063)
chr6 (744-803)||(10054952-10055012)
chr6 (531-619)||(29240519-29240607)
chr6 (528-590)||(33136579-33136641)
chr6 (554-623)||(34027468-34027537)
[»] chr3 (3 HSPs)
chr3 (724-802)||(27825268-27825347)
chr3 (754-803)||(43244303-43244352)
chr3 (608-643)||(48089720-48089755)
[»] chr5 (1 HSPs)
chr5 (726-782)||(27374204-27374260)
[»] chr2 (1 HSPs)
chr2 (724-777)||(42774772-42774825)


Alignment Details
Target: chr4 (Bit Score: 718; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 718; E-Value: 0
Query Start/End: Original strand, 64 - 950
Target Start/End: Original strand, 21591895 - 21592769
Alignment:
Q  64 catctcttgctgtactctaaaggtttttgaccactaaacgttgaccttatttttatctttgtagcataagttgtggatttagttgagaatcttggcatct 163  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21591895 catctcttgctgtactctaaaggtttttgaccactaaacgttgaccttatttttatctttgtagcataagttgtggatttagttgagaatcttggcatct 21591994  T
Q  164 aggtgggaatgtgtggtaaagatgagttgtattctatttcatctttttatgcatttggtcttataagtggggtggacctacattgggtgggacaagaagg 263  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21591995 aggtgggaatgtgtggtaaagatgggttgtattctatttcatctttttatgcatttggtcttataagtggggtggacctacattgggtgggacaagaagg 21592094  T
Q  264 cagtgttagacattataatgtgctaatagtgacctttgcaaatattgcattttttaaagattactttattgctgcactgttcagatttttctgtttagtg 363  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  21592095 cagtgttagacattataatgtgctaatagtgacctttgcaaatattgcattttttaaagattactttattgctgcactgttcagattttcctgtttagtg 21592194  T
Q  364 aacttacttcnnnnnnnnnnnnnnnnnnnaataacttattaatgtcatattagtttagaatggccatgttttacattactgaatttatttgattaataat 463  Q
    ||||| ||||                   ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  21592195 aacttgcttctttttcttttcatttttttaataacttattaatgtcatattagtttagaatggccatgtttttcattactgaatttatttgattaataat 21592294  T
Q  464 aaatttttcttaaagtgctttgatccatatatagcctgccacaaaacttttgaaggaggcaattttaattctagcggtgtagaattgaccttgacatgtt 563  Q
    ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||     
T  21592295 aaatttttctttaagtgctttgatccatatatagactgccacaaaacttttgaagggggcaattttaattctagcggtgtagaattgaccttgacatgt- 21592393  T
Q  564 aagatgttctcgagtataattgatttttccgcaggagttgattcgaacttgaagcttttgcctctacaaataatttttagtcttgcatcccattgttcaa 663  Q
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  21592394 -------tctcgagtataattgatttttccgcaggagttgattctaacttgaagcttttgcctctacaaataatttttagtcttgcat-ccattgttcaa 21592485  T
Q  664 cttagttttacatgattgaattcaaacataaataataaaataattcattttacatttagctcaactcacttttagttggaatcaatcttataaaatcaat 763  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21592486 cttagttttacatgattgaattcaaacataaataat-aaataattcattttacatttagctcaactcacttttagttggaatcaatcttataaaatcaat 21592584  T
Q  764 tcattc-aaatcaaattttgttaccgcaaaaccaaacacactctttagtagttaggactgggttgttgccacttgttggcttacctttcaaccacggtca 862  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  21592585 tcattcaaaatcaaattttgttaccgcaaaaccaaacacactctttagtagttaggact-ggttgttgccacttgttggcttacctttcaaccacggtca 21592683  T
Q  863 aatttacaaattaagctttatttgaattaagcttcaaaattcagttttgaaatcacagttattaaattattaatatgtctttgggaaa 950  Q
    |||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  21592684 aatttacaaatt-agctttatttcaattaagcttcaaaattcag-tttgaaatcacagttattaaattattaatatgtctttgggaaa 21592769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 554 - 619
Target Start/End: Original strand, 2171740 - 2171805
Alignment:
Q  554 ttgacatgttaagatgttctcgagtataattgatttttccgcaggagttgattcgaacttgaagct 619  Q
    ||||||||||  |||||||||||||| |||||| ||| || | ||| |||||||||||||||||||    
T  2171740 ttgacatgtttggatgttctcgagtaaaattgactttgcccccggaattgattcgaacttgaagct 2171805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.000000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 531 - 593
Target Start/End: Original strand, 7263001 - 7263063
Alignment:
Q  531 attctagcggtgtagaattgaccttgacatgttaagatgttctcgagtataattgatttttcc 593  Q
    |||||||  ||||||||||||  ||||||| ||| ||||||||||||||||||||||||||||    
T  7263001 attctagaagtgtagaattgattttgacattttaggatgttctcgagtataattgatttttcc 7263063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 744 - 803
Target Start/End: Complemental strand, 10055012 - 10054952
Alignment:
Q  744 atcaatcttataaaatcaattcattcaaa-tcaaattttgttaccgcaaaaccaaacacac 803  Q
    |||||| ||| |||| ||||||||||||| |||| |||||| |||||||||||||||||||    
T  10055012 atcaattttacaaaaccaattcattcaaaatcaacttttgtcaccgcaaaaccaaacacac 10054952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 531 - 619
Target Start/End: Complemental strand, 29240607 - 29240519
Alignment:
Q  531 attctagcggtgtagaattgaccttgacatgttaagatgttctcgagtataattgatttttccgcaggagttgattcgaacttgaagct 619  Q
    ||||||| |||||| ||||||  ||||||||||| ||| || || |||| |||||||||| || |  |||||||||| |||||||||||    
T  29240607 attctagaggtgtaaaattgattttgacatgttaggatattttcaagtagaattgattttacctccagagttgattctaacttgaagct 29240519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 528 - 590
Target Start/End: Complemental strand, 33136641 - 33136579
Alignment:
Q  528 ttaattctagcggtgtagaattgaccttgacatgttaagatgttctcgagtataattgatttt 590  Q
    |||||||||| |||||| ||||||  ||||||||||  | || ||||||||||||||||||||    
T  33136641 ttaattctagaggtgtataattgattttgacatgtttggttgctctcgagtataattgatttt 33136579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 554 - 623
Target Start/End: Complemental strand, 34027537 - 34027468
Alignment:
Q  554 ttgacatgttaagatgttctcgagtataattgatttttccgcaggagttgattcgaacttgaagcttttg 623  Q
    ||||||||||||| || |||||| || |||||||| | ||||  || ||||||| |||||||||||||||    
T  34027537 ttgacatgttaagttgctctcgaataaaattgattgtgccgctagaattgattctaacttgaagcttttg 34027468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000009; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 724 - 802
Target Start/End: Complemental strand, 27825347 - 27825268
Alignment:
Q  724 tcaactcacttttagttggaatcaatcttataaaatcaattcattc-aaatcaaattttgttaccgcaaaaccaaacaca 802  Q
    |||||| |||||||||   ||||||| ||||||||| ||||||||| ||||||| || |||||||||| |||||||||||    
T  27825347 tcaactaacttttagtcataatcaattttataaaataaattcattcaaaatcaatttgtgttaccgcataaccaaacaca 27825268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 754 - 803
Target Start/End: Complemental strand, 43244352 - 43244303
Alignment:
Q  754 taaaatcaattcattcaaatcaaattttgttaccgcaaaaccaaacacac 803  Q
    |||| |||||||||||||||||| |||||| ||||||||||| |||||||    
T  43244352 taaagtcaattcattcaaatcaatttttgtaaccgcaaaacccaacacac 43244303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 608 - 643
Target Start/End: Complemental strand, 48089755 - 48089720
Alignment:
Q  608 gaacttgaagcttttgcctctacaaataatttttag 643  Q
    ||||||||||||||||||||||||||| ||||||||    
T  48089755 gaacttgaagcttttgcctctacaaatgatttttag 48089720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 726 - 782
Target Start/End: Complemental strand, 27374260 - 27374204
Alignment:
Q  726 aactcacttttagttggaatcaatcttataaaatcaattcattcaaatcaaattttg 782  Q
    |||| ||||||||| ||||||||| ||| | |||||||||||||||||||| |||||    
T  27374260 aacttacttttagtcggaatcaattttacagaatcaattcattcaaatcaatttttg 27374204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 724 - 777
Target Start/End: Complemental strand, 42774825 - 42774772
Alignment:
Q  724 tcaactcacttttagttggaatcaatcttataaaatcaattcattcaaatcaaa 777  Q
    |||||| | |||||||  |||||||| ||| |||||||||||||||||||||||    
T  42774825 tcaacttatttttagtcagaatcaattttacaaaatcaattcattcaaatcaaa 42774772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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