View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5789-Insertion-2 (Length: 543)

Name: NF5789-Insertion-2
Description: NF5789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5789-Insertion-2
NF5789-Insertion-2
[»] chr3 (31 HSPs)
chr3 (8-543)||(38626323-38626858)
chr3 (439-514)||(39657982-39658057)
chr3 (435-513)||(42644300-42644379)
chr3 (429-475)||(48089641-48089687)
chr3 (410-513)||(30958105-30958209)
chr3 (410-513)||(30973917-30974021)
chr3 (435-473)||(7012678-7012716)
chr3 (433-471)||(24916576-24916614)
chr3 (435-521)||(25129444-25129530)
chr3 (435-513)||(31766160-31766238)
chr3 (436-473)||(10852738-10852775)
chr3 (436-473)||(23918881-23918918)
chr3 (416-473)||(50664777-50664834)
chr3 (416-471)||(1441362-1441417)
chr3 (426-513)||(25181239-25181326)
chr3 (435-514)||(32112088-32112167)
chr3 (435-482)||(40415312-40415359)
chr3 (435-514)||(44225603-44225682)
chr3 (442-521)||(49158621-49158700)
chr3 (413-471)||(3776594-3776652)
chr3 (435-477)||(7899143-7899185)
chr3 (435-477)||(16246115-16246157)
chr3 (435-473)||(23496355-23496393)
chr3 (435-513)||(41115275-41115353)
chr3 (435-477)||(52931593-52931635)
chr3 (435-472)||(31084245-31084282)
chr3 (420-473)||(34561131-34561184)
chr3 (418-471)||(41591308-41591361)
chr3 (427-472)||(49526695-49526740)
chr3 (412-468)||(7262885-7262941)
chr3 (437-465)||(47278803-47278831)
[»] chr8 (22 HSPs)
chr8 (8-167)||(34622376-34622535)
chr8 (410-476)||(2764419-2764485)
chr8 (416-471)||(15206723-15206778)
chr8 (435-473)||(19649232-19649270)
chr8 (418-513)||(32994153-32994250)
chr8 (410-471)||(16972019-16972080)
chr8 (427-471)||(32767475-32767519)
chr8 (438-473)||(10552934-10552969)
chr8 (410-513)||(18123295-18123398)
chr8 (435-514)||(29970848-29970927)
chr8 (410-513)||(32927961-32928064)
chr8 (410-457)||(43492206-43492253)
chr8 (435-473)||(22936818-22936856)
chr8 (435-473)||(31246340-31246378)
chr8 (426-472)||(33588757-33588803)
chr8 (436-514)||(38715193-38715271)
chr8 (435-473)||(43550937-43550975)
chr8 (410-471)||(36447703-36447764)
chr8 (435-472)||(36779437-36779474)
chr8 (435-500)||(38516344-38516409)
chr8 (429-470)||(38875211-38875252)
chr8 (329-372)||(5997374-5997418)
[»] chr7 (20 HSPs)
chr7 (413-513)||(40491650-40491750)
chr7 (427-512)||(15311189-15311274)
chr7 (410-475)||(40561709-40561774)
chr7 (437-477)||(26975305-26975345)
chr7 (411-471)||(45557435-45557495)
chr7 (416-470)||(18350120-18350174)
chr7 (439-513)||(42481803-42481877)
chr7 (427-471)||(29829324-29829368)
chr7 (429-473)||(38230121-38230165)
chr7 (435-473)||(42752203-42752241)
chr7 (435-473)||(48459769-48459807)
chr7 (435-472)||(4228606-4228643)
chr7 (436-473)||(10371970-10372007)
chr7 (410-471)||(12306792-12306853)
chr7 (436-473)||(20088929-20088966)
chr7 (409-470)||(22310415-22310476)
chr7 (410-471)||(27571931-27571992)
chr7 (324-392)||(45369107-45369176)
chr7 (411-471)||(38123621-38123681)
chr7 (437-473)||(44967411-44967447)
[»] chr2 (21 HSPs)
chr2 (410-470)||(15220817-15220877)
chr2 (427-472)||(3853939-3853984)
chr2 (410-471)||(16518847-16518908)
chr2 (435-514)||(12110921-12111000)
chr2 (435-477)||(11005710-11005752)
chr2 (435-473)||(23359953-23359991)
chr2 (435-471)||(10918650-10918686)
chr2 (410-477)||(32307153-32307220)
chr2 (443-514)||(40704682-40704753)
chr2 (435-473)||(1945062-1945100)
chr2 (435-473)||(23377551-23377589)
chr2 (435-477)||(31224727-31224769)
chr2 (437-514)||(10618862-10618939)
chr2 (436-473)||(30007576-30007613)
chr2 (435-472)||(34433330-34433367)
chr2 (435-472)||(42089552-42089589)
chr2 (438-498)||(1763270-1763330)
chr2 (444-500)||(3716571-3716627)
chr2 (427-471)||(4908876-4908920)
chr2 (435-471)||(8843060-8843096)
chr2 (439-471)||(21105561-21105593)
[»] chr4 (26 HSPs)
chr4 (410-477)||(22683933-22684000)
chr4 (426-514)||(39000531-39000619)
chr4 (435-513)||(38740287-38740365)
chr4 (416-514)||(43868211-43868309)
chr4 (410-471)||(33843780-33843841)
chr4 (435-472)||(36150627-36150664)
chr4 (437-514)||(48575480-48575557)
chr4 (429-470)||(54487248-54487289)
chr4 (411-471)||(25927376-25927436)
chr4 (330-392)||(2171738-2171801)
chr4 (410-469)||(17898085-17898144)
chr4 (449-520)||(24364098-24364169)
chr4 (410-477)||(25319117-25319184)
chr4 (438-477)||(46382869-46382908)
chr4 (435-473)||(16566328-16566366)
chr4 (435-473)||(22699765-22699803)
chr4 (435-473)||(22980727-22980765)
chr4 (435-473)||(22994314-22994352)
chr4 (435-477)||(41866177-41866219)
chr4 (435-477)||(52062999-52063041)
chr4 (435-472)||(14597650-14597687)
chr4 (436-473)||(28947774-28947811)
chr4 (409-477)||(1023867-1023935)
chr4 (442-502)||(12224459-12224519)
chr4 (437-473)||(33574203-33574239)
chr4 (437-473)||(54488630-54488666)
[»] chr6 (17 HSPs)
chr6 (413-475)||(882758-882820)
chr6 (414-520)||(1499973-1500079)
chr6 (438-477)||(25208723-25208762)
chr6 (405-514)||(3524989-3525098)
chr6 (409-513)||(8856375-8856479)
chr6 (456-508)||(9043722-9043774)
chr6 (437-477)||(20846423-20846463)
chr6 (409-465)||(34620954-34621010)
chr6 (409-465)||(34748391-34748447)
chr6 (409-471)||(434192-434254)
chr6 (435-477)||(16442371-16442413)
chr6 (435-473)||(16548177-16548215)
chr6 (435-472)||(7486524-7486561)
chr6 (416-472)||(8551118-8551175)
chr6 (432-472)||(3605777-3605817)
chr6 (435-475)||(6364574-6364614)
chr6 (435-471)||(29240407-29240443)
[»] chr1 (29 HSPs)
chr1 (435-473)||(29759713-29759751)
chr1 (448-502)||(47307505-47307559)
chr1 (436-513)||(13344836-13344913)
chr1 (410-471)||(34915135-34915196)
chr1 (410-471)||(35961437-35961498)
chr1 (435-499)||(4347036-4347100)
chr1 (416-472)||(7301834-7301890)
chr1 (437-477)||(7335901-7335941)
chr1 (410-521)||(12655314-12655424)
chr1 (409-471)||(5268287-5268349)
chr1 (416-473)||(44786871-44786928)
chr1 (435-511)||(3887364-3887439)
chr1 (437-477)||(32365143-32365183)
chr1 (410-461)||(213246-213297)
chr1 (434-513)||(40642990-40643069)
chr1 (410-465)||(48548975-48549030)
chr1 (435-473)||(1199889-1199927)
chr1 (435-473)||(20800303-20800341)
chr1 (427-473)||(33693088-33693134)
chr1 (435-473)||(35569228-35569266)
chr1 (435-473)||(40352453-40352491)
chr1 (435-473)||(48510970-48511008)
chr1 (437-471)||(50751256-50751290)
chr1 (410-471)||(7524182-7524243)
chr1 (439-516)||(26253024-26253101)
chr1 (443-471)||(3819719-3819747)
chr1 (438-521)||(18325296-18325377)
chr1 (411-471)||(42423142-42423202)
chr1 (435-471)||(47978389-47978425)
[»] scaffold0172 (1 HSPs)
scaffold0172 (435-514)||(15241-15320)
[»] chr5 (22 HSPs)
chr5 (427-510)||(29922986-29923069)
chr5 (435-477)||(2483732-2483774)
chr5 (435-477)||(2868371-2868413)
chr5 (427-465)||(4306598-4306636)
chr5 (435-473)||(22811078-22811116)
chr5 (437-470)||(24036627-24036660)
chr5 (438-498)||(5465398-5465458)
chr5 (438-498)||(6988217-6988277)
chr5 (329-392)||(10898672-10898736)
chr5 (413-477)||(10957205-10957268)
chr5 (410-477)||(28304821-28304888)
chr5 (435-473)||(19784865-19784903)
chr5 (435-473)||(22482241-22482279)
chr5 (410-500)||(35138949-35139039)
chr5 (439-473)||(35816985-35817019)
chr5 (320-389)||(38045390-38045460)
chr5 (409-498)||(10273268-10273357)
chr5 (328-392)||(29922575-29922640)
chr5 (431-472)||(40885259-40885300)
chr5 (435-472)||(43152386-43152423)
chr5 (437-513)||(14299422-14299498)
chr5 (412-520)||(14671096-14671203)
[»] scaffold0393 (1 HSPs)
scaffold0393 (327-392)||(12378-12444)
[»] scaffold0361 (1 HSPs)
scaffold0361 (409-465)||(14075-14131)
[»] scaffold0031 (2 HSPs)
scaffold0031 (436-477)||(99701-99742)
scaffold0031 (437-477)||(99918-99958)
[»] scaffold0009 (1 HSPs)
scaffold0009 (436-473)||(199394-199431)
[»] scaffold0005 (1 HSPs)
scaffold0005 (435-472)||(219691-219728)
[»] scaffold0024 (1 HSPs)
scaffold0024 (405-473)||(23546-23614)
[»] scaffold0015 (1 HSPs)
scaffold0015 (435-499)||(65538-65602)


Alignment Details
Target: chr3 (Bit Score: 512; Significance: 0; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 8 - 543
Target Start/End: Original strand, 38626323 - 38626858
Alignment:
Q  8 gggacactacatccttgttcaaattagatacacctttggggtaacggccaaaatcaacaacaacctgaatagactcgttcagctgatctcgcaagaacct 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38626323 gggacactacatccttgttcaaattagatacacctttggggtaacggccaaaatcaacaacaacctgaatagactcgttcagctgatctcgcaagaacct 38626422  T
Q  108 aaatgcattgggatgtgtcataggaaatatgtggtctctacctccagacctttgccaatactttgattgccttaataatcccatcaaatcaatctggaac 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  38626423 aaatgcattgggatgtgtcataggaaatatgtggtctctacctccagacctttgccaatactttgattgccctaataatcccatcaaatcaatctggaac 38626522  T
Q  208 aagaaacaagccatgtttaacactagcaggtacacgaaagaaacaacataagattaaaaaattaaagacacacagaaaattatgtgtgtgtttcgtctca 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  38626523 aagaaacaagccatgtttaacactagcaggtacacgaaagaaacaacataagattaaaaaattaaagacacacagaaaattatgtgtgcgtttcgtctca 38626622  T
Q  308 attttggatggagcaaattttattttgacatgtttggatgtttccagtaaaattgattttgcctcgggaattgattataacttgagacttgaatttgtat 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38626623 attttggatggagcaaattttattttgacatgtttggatgtttccagtaaaattgattttgcctcgggaattgattataacttgagacttgaatttgtat 38626722  T
Q  408 ctttcaactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcacttttaactaaagtcgagtttacataatcaattcattaaaaa 507  Q
    ||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  38626723 ctttcaactcacttccacgtgaatatgtccaaacataaatcatttcacattcaactcacttttaactaaagtcgactttacataatcaattcattaaaaa 38626822  T
Q  508 tcaatttatgtcacattcagttagagacaaatacac 543  Q
    ||||||||||||||||||||||||||||||||||||    
T  38626823 tcaatttatgtcacattcagttagagacaaatacac 38626858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 439 - 514
Target Start/End: Complemental strand, 39658057 - 39657982
Alignment:
Q  439 aacataaatcattttacattcaactcacttttaactaaagtcgagtttacataatcaattcattaaaaatcaattt 514  Q
    ||||||||| ||||||||||||||  |||||||| |||| || | ||||||||||||||| ||| |||||||||||    
T  39658057 aacataaattattttacattcaacgaacttttaagtaaaatcaattttacataatcaatttattcaaaatcaattt 39657982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 435 - 513
Target Start/End: Original strand, 42644300 - 42644379
Alignment:
Q  435 tccaaacataaatcattttacattcaactcacttttaactaaagtcga-gtttacataatcaattcattaaaaatcaatt 513  Q
    ||||||||||||||| ||||||||||||||||||||||||||| || |  |||| | |||||||||| | ||||||||||    
T  42644300 tccaaacataaatcactttacattcaactcacttttaactaaaatcaatttttataaaatcaattcactcaaaatcaatt 42644379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 429 - 475
Target Start/End: Complemental strand, 48089687 - 48089641
Alignment:
Q  429 aatgtgtccaaacataaatcattttacattcaactcacttttaacta 475  Q
    ||||| ||||| |||||||||||||||||||||||||||||||||||    
T  48089687 aatgtatccaatcataaatcattttacattcaactcacttttaacta 48089641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 410 - 513
Target Start/End: Original strand, 30958105 - 30958209
Alignment:
Q  410 ttcaactcacttctacgtgaatgtgtccaaacataaatcat-tttacattcaactcacttttaactaaagtcgagtttacataatcaattcattaaaaat 508  Q
    ||||| |||||| ||| ||||| | ||||||||||||| |  |||||||||||||||| |||| | ||| || | |||||| |||||||||||| |||||    
T  30958105 ttcaattcacttttacatgaatatatccaaacataaataaactttacattcaactcacatttagccaaaatcaattttacaaaatcaattcattcaaaat 30958204  T
Q  509 caatt 513  Q
    |||||    
T  30958205 caatt 30958209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 410 - 513
Target Start/End: Original strand, 30973917 - 30974021
Alignment:
Q  410 ttcaactcacttctacgtgaatgtgtccaaacataaatcat-tttacattcaactcacttttaactaaagtcgagtttacataatcaattcattaaaaat 508  Q
    ||||| |||||| ||| ||||| | ||||||||||||| |  |||||||||||||||| |||| | ||| || | |||||| |||||||||||| |||||    
T  30973917 ttcaattcacttttacatgaatatatccaaacataaataaactttacattcaactcacatttagccaaaatcaattttacaaaatcaattcattcaaaat 30974016  T
Q  509 caatt 513  Q
    |||||    
T  30974017 caatt 30974021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 435 - 473
Target Start/End: Original strand, 7012678 - 7012716
Alignment:
Q  435 tccaaacataaatcattttacattcaactcacttttaac 473  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  7012678 tccaaacataaatcactttacattcaactcacttttaac 7012716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 433 - 471
Target Start/End: Original strand, 24916576 - 24916614
Alignment:
Q  433 tgtccaaacataaatcattttacattcaactcactttta 471  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  24916576 tgtctaaacataaatcattttacattcaactcactttta 24916614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 435 - 521
Target Start/End: Complemental strand, 25129530 - 25129444
Alignment:
Q  435 tccaaacataaatcattttacattcaactcacttttaactaaagtcgagtttacataatcaattcattaaaaatcaatttatgtcac 521  Q
    |||||||||||||||  |||||||||||||||||||| |   | || | ||||||  ||||||||||| || |||||||||||||||    
T  25129530 tccaaacataaatcacgttacattcaactcacttttatcctgaatcaattttacaacatcaattcattcaagatcaatttatgtcac 25129444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 435 - 513
Target Start/End: Complemental strand, 31766238 - 31766160
Alignment:
Q  435 tccaaacataaatcattttacattcaactcacttttaactaaagtcgagtttacataatcaattcattaaaaatcaatt 513  Q
    ||||||||||||||| ||||  ||||||||||||||| | ||| |  | |||||| |||||||||||| ||||||||||    
T  31766238 tccaaacataaatcactttaacttcaactcacttttatccaaaattaattttacaaaatcaattcattcaaaatcaatt 31766160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 436 - 473
Target Start/End: Complemental strand, 10852775 - 10852738
Alignment:
Q  436 ccaaacataaatcattttacattcaactcacttttaac 473  Q
    |||||||||||||| |||||||||||||||||||||||    
T  10852775 ccaaacataaatcactttacattcaactcacttttaac 10852738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 436 - 473
Target Start/End: Original strand, 23918881 - 23918918
Alignment:
Q  436 ccaaacataaatcattttacattcaactcacttttaac 473  Q
    |||||||||||||| |||||||||||||||||||||||    
T  23918881 ccaaacataaatcactttacattcaactcacttttaac 23918918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 416 - 473
Target Start/End: Original strand, 50664777 - 50664834
Alignment:
Q  416 tcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcacttttaac 473  Q
    ||||||||| |||  ||| ||||||||||||||| || ||||||||||||||||||||    
T  50664777 tcacttctaagtgtgtgtatccaaacataaatcaattcacattcaactcacttttaac 50664834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 416 - 471
Target Start/End: Complemental strand, 1441417 - 1441362
Alignment:
Q  416 tcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcactttta 471  Q
    |||||| ||||||||||| || ||||| |||||| ||||| |||||||||||||||    
T  1441417 tcacttttacgtgaatgtatctaaacacaaatcactttacgttcaactcactttta 1441362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 426 - 513
Target Start/End: Original strand, 25181239 - 25181326
Alignment:
Q  426 gtgaatgtgtccaaacataaatcattttacattcaactcacttttaactaaagtcgagtttacataatcaattcattaaaaatcaatt 513  Q
    ||||| || ||||||||||||| |||||||||| |||||||||||||  ||| || | | |||| |||||||||| | || |||||||    
T  25181239 gtgaaggtatccaaacataaataattttacattaaactcacttttaatcaaaatcaattctacaaaatcaattcaatcaatatcaatt 25181326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 435 - 514
Target Start/End: Original strand, 32112088 - 32112167
Alignment:
Q  435 tccaaacataaatcattttacattcaactcacttttaactaaagtcgagtttacataatcaattcattaaaaatcaattt 514  Q
    ||||||||||||| | ||| ||||||||||| ||||| | | | || | ||||||||||||||||| | |||||||||||    
T  32112088 tccaaacataaattacttttcattcaactcatttttatccataatcaattttacataatcaattcactcaaaatcaattt 32112167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 435 - 482
Target Start/End: Complemental strand, 40415359 - 40415312
Alignment:
Q  435 tccaaacataaatcattttacattcaactcacttttaactaaagtcga 482  Q
    ||||||||||||| | ||||||| ||||||||||||||||||| ||||    
T  40415359 tccaaacataaattaatttacatccaactcacttttaactaaaatcga 40415312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 435 - 514
Target Start/End: Original strand, 44225603 - 44225682
Alignment:
Q  435 tccaaacataaatcattttacattcaactcacttttaactaaagtcgagtttacataatcaattcattaaaaatcaattt 514  Q
    ||||||||||||||| |||||||| |||||||||||||| ||| || | | |||| ||||||||   | |||||||||||    
T  44225603 tccaaacataaatcactttacattaaactcacttttaacgaaaatcaattctacaaaatcaattatattaaaatcaattt 44225682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 442 - 521
Target Start/End: Original strand, 49158621 - 49158700
Alignment:
Q  442 ataaatcattttacattcaactcacttttaactaaagtcgagtttacataatcaattcattaaaaatcaatttatgtcac 521  Q
    ||||||||| ||| |||| | ||||||||| || || || | |||||| |||||||||||| ||||||||||||| ||||    
T  49158621 ataaatcatcttatattctagtcacttttatcttaaatcaattttacaaaatcaattcattcaaaatcaatttatatcac 49158700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 413 - 471
Target Start/End: Original strand, 3776594 - 3776652
Alignment:
Q  413 aactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcactttta 471  Q
    ||||||||| ||| | ||||| ||||| ||||||||| ||||||||||||||| |||||    
T  3776594 aactcacttttacatcaatgtatccaagcataaatcactttacattcaactcaatttta 3776652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 435 - 477
Target Start/End: Complemental strand, 7899185 - 7899143
Alignment:
Q  435 tccaaacataaatcattttacattcaactcacttttaactaaa 477  Q
    |||||||||||||| ||||||||||||||  ||||||||||||    
T  7899185 tccaaacataaatcgttttacattcaactatcttttaactaaa 7899143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 435 - 477
Target Start/End: Complemental strand, 16246157 - 16246115
Alignment:
Q  435 tccaaacataaatcattttacattcaactcacttttaactaaa 477  Q
    ||||||||||||||| |||||||  ||||||||||||||||||    
T  16246157 tccaaacataaatcaatttacatctaactcacttttaactaaa 16246115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 435 - 473
Target Start/End: Original strand, 23496355 - 23496393
Alignment:
Q  435 tccaaacataaatcattttacattcaactcacttttaac 473  Q
    ||||||||||||||| || ||||||||||||||||||||    
T  23496355 tccaaacataaatcaattcacattcaactcacttttaac 23496393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 435 - 513
Target Start/End: Complemental strand, 41115353 - 41115275
Alignment:
Q  435 tccaaacataaatcattttacattcaactcacttttaactaaagtcgagtttacataatcaattcattaaaaatcaatt 513  Q
    |||||||||||| |||||||||||||||||| | ||| | ||| || | | |||| |||||||||||| | ||||||||    
T  41115353 tccaaacataaaccattttacattcaactcattgttagccaaaatcaattatacaaaatcaattcattcataatcaatt 41115275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 435 - 477
Target Start/End: Complemental strand, 52931635 - 52931593
Alignment:
Q  435 tccaaacataaatcattttacattcaactcacttttaactaaa 477  Q
    ||||||||||||||| |||||| | ||||||||||||||||||    
T  52931635 tccaaacataaatcaatttacactaaactcacttttaactaaa 52931593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 435 - 472
Target Start/End: Original strand, 31084245 - 31084282
Alignment:
Q  435 tccaaacataaatcattttacattcaactcacttttaa 472  Q
    ||||||||||||||| || |||||||||||||||||||    
T  31084245 tccaaacataaatcaattcacattcaactcacttttaa 31084282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 420 - 473
Target Start/End: Original strand, 34561131 - 34561184
Alignment:
Q  420 ttctacgtgaatgtgtccaaacataaatcattttacattcaactcacttttaac 473  Q
    ||||| || ||||| ||||||||||||||| ||  |||||||||||||||||||    
T  34561131 ttctaagtcaatgtatccaaacataaatcaattcgcattcaactcacttttaac 34561184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 471
Target Start/End: Complemental strand, 41591361 - 41591308
Alignment:
Q  418 acttctacgtgaatgtgtccaaacataaatcattttacattcaactcactttta 471  Q
    |||| ||| ||||||| ||||||||||||||| |||| |||||||||| |||||    
T  41591361 acttttacatgaatgtatccaaacataaatcactttaaattcaactcattttta 41591308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 472
Target Start/End: Complemental strand, 49526740 - 49526695
Alignment:
Q  427 tgaatgtgtccaaacataaatcattttacattcaactcacttttaa 472  Q
    ||||||| ||||||||||||||| |||||| |||| ||||||||||    
T  49526740 tgaatgtatccaaacataaatcaatttacaatcaattcacttttaa 49526695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 412 - 468
Target Start/End: Original strand, 7262885 - 7262941
Alignment:
Q  412 caactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcactt 468  Q
    |||||||||| ||| ||||||| || ||||||||| |||| ||| ||||||||||||    
T  7262885 caactcacttttacatgaatgtatcaaaacataaaacattataccttcaactcactt 7262941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 437 - 465
Target Start/End: Original strand, 47278803 - 47278831
Alignment:
Q  437 caaacataaatcattttacattcaactca 465  Q
    |||||||||||||||||||||||||||||    
T  47278803 caaacataaatcattttacattcaactca 47278831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 8e-16; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 8 - 167
Target Start/End: Complemental strand, 34622535 - 34622376
Alignment:
Q  8 gggacactacatccttgttcaaattagatacacctttggggtaacggccaaaatcaacaacaacctgaatagactcgttcagctgatctcgcaagaacct 107  Q
    ||||||| ||||| || ||||||||||| |  || || ||||| ||||||||||| |||||||| |||||||  || ||||  ||||  || | ||| ||    
T  34622535 gggacaccacatctttattcaaattagacatgcccttagggtagcggccaaaatccacaacaacttgaatagtatcattcaattgattacgtaggaatct 34622436  T
Q  108 aaatgcattgggatgtgtcataggaaatatgtggtctctacctccagacctttgccaata 167  Q
    ||| |||||||| ||||||||||||||||  |||||||| |||  |||||| ||||||||    
T  34622435 aaaggcattggggtgtgtcataggaaatacatggtctctgcctttagacctctgccaata 34622376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 410 - 476
Target Start/End: Complemental strand, 2764485 - 2764419
Alignment:
Q  410 ttcaactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcacttttaactaa 476  Q
    |||||||||||| ||||||||||| |||||| |||||||| |||| |||||||| ||||||||||||    
T  2764485 ttcaactcacttttacgtgaatgtatccaaatataaatcactttatattcaacttacttttaactaa 2764419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 416 - 471
Target Start/End: Original strand, 15206723 - 15206778
Alignment:
Q  416 tcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcactttta 471  Q
    ||||||||| || ||||| ||||||||||||||| || ||||||||||||||||||    
T  15206723 tcacttctaagtcaatgtatccaaacataaatcaattcacattcaactcactttta 15206778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 435 - 473
Target Start/End: Original strand, 19649232 - 19649270
Alignment:
Q  435 tccaaacataaatcattttacattcaactcacttttaac 473  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  19649232 tccaaacataaatcactttacattcaactcacttttaac 19649270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 418 - 513
Target Start/End: Complemental strand, 32994250 - 32994153
Alignment:
Q  418 acttctacgtgaatgtgtccaaacataaatca--ttttacattcaactcacttttaactaaagtcgagtttacataatcaattcattaaaaatcaatt 513  Q
    |||| ||| |||||| ||||||||||||||||  |||||| ||||||||||||| | | | | || | |||||||||||| |||||| ||||||||||    
T  32994250 acttttacatgaatgagtccaaacataaatcaaattttaccttcaactcactttcagccagaatcaattttacataatcagttcattcaaaatcaatt 32994153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 410 - 471
Target Start/End: Complemental strand, 16972080 - 16972019
Alignment:
Q  410 ttcaactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcactttta 471  Q
    ||||| |||||| ||| ||||||| | |||||| |||||||||||| |||||||||||||||    
T  16972080 ttcaaatcacttttacatgaatgtattcaaacacaaatcattttaccttcaactcactttta 16972019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 427 - 471
Target Start/End: Original strand, 32767475 - 32767519
Alignment:
Q  427 tgaatgtgtccaaacataaatcattttacattcaactcactttta 471  Q
    ||||||| ||||||||||||||| ||||||| |||||||||||||    
T  32767475 tgaatgtatccaaacataaatcaatttacatccaactcactttta 32767519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 438 - 473
Target Start/End: Complemental strand, 10552969 - 10552934
Alignment:
Q  438 aaacataaatcattttacattcaactcacttttaac 473  Q
    |||||||||||| |||||||||||||||||||||||    
T  10552969 aaacataaatcaatttacattcaactcacttttaac 10552934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 410 - 513
Target Start/End: Original strand, 18123295 - 18123398
Alignment:
Q  410 ttcaactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcacttttaactaaagtcgagtttacataatcaattcattaaaaatc 509  Q
    |||||||||||| ||| | ||| | | | |||| |||||||||||| ||||| |||||||||  || |||||| ||||||| ||||||||| |  |||||    
T  18123295 ttcaactcacttttacataaatatattccaacacaaatcattttaccttcaattcacttttagttagagtcgattttacatcatcaattcactctaaatc 18123394  T
Q  510 aatt 513  Q
    ||||    
T  18123395 aatt 18123398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 435 - 514
Target Start/End: Original strand, 29970848 - 29970927
Alignment:
Q  435 tccaaacataaatcattttacattcaactcacttttaactaaagtcgagtttacataatcaattcattaaaaatcaattt 514  Q
    ||||||||||||||| |||| | |||||||||||||||||||| || | | |||| | |||||||  | |||||||||||    
T  29970848 tccaaacataaatcactttaaactcaactcacttttaactaaaatcaattatacaaattcaattctatcaaaatcaattt 29970927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 410 - 513
Target Start/End: Original strand, 32927961 - 32928064
Alignment:
Q  410 ttcaactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcacttttaactaaagtcgagtttacataatcaattcattaaaaatc 509  Q
    |||||||||||| ||| ||||||| |||||||| |||||| ||| | ||||||||| |||||   | | || | ||||||||||||||||  | ||||||    
T  32927961 ttcaactcacttttacatgaatgtatccaaacacaaatcactttgccttcaactcaattttagtaagaatcaattttacataatcaattccctcaaaatc 32928060  T
Q  510 aatt 513  Q
    ||||    
T  32928061 aatt 32928064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 410 - 457
Target Start/End: Complemental strand, 43492253 - 43492206
Alignment:
Q  410 ttcaactcacttctacgtgaatgtgtccaaacataaatcattttacat 457  Q
    ||||||| |||| ||| ||||||| |||||||||||||||||||||||    
T  43492253 ttcaacttacttttacatgaatgtatccaaacataaatcattttacat 43492206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 435 - 473
Target Start/End: Complemental strand, 22936856 - 22936818
Alignment:
Q  435 tccaaacataaatcattttacattcaactcacttttaac 473  Q
    ||||||||||||||| || ||||||||||||||||||||    
T  22936856 tccaaacataaatcaattcacattcaactcacttttaac 22936818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 435 - 473
Target Start/End: Complemental strand, 31246378 - 31246340
Alignment:
Q  435 tccaaacataaatcattttacattcaactcacttttaac 473  Q
    ||||||||||||||| || ||||||||||||||||||||    
T  31246378 tccaaacataaatcaattcacattcaactcacttttaac 31246340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 426 - 472
Target Start/End: Original strand, 33588757 - 33588803
Alignment:
Q  426 gtgaatgtgtccaaacataaatcattttacattcaactcacttttaa 472  Q
    ||||| || ||||||||||||| |||||||||| |||||||||||||    
T  33588757 gtgaaggtatccaaacataaataattttacattaaactcacttttaa 33588803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 436 - 514
Target Start/End: Complemental strand, 38715271 - 38715193
Alignment:
Q  436 ccaaacataaatcattttacattcaactcacttttaactaaagtcgagtttacataatcaattcattaaaaatcaattt 514  Q
    |||||||||||||| |||||| | |||||| ||||||||||| || | | | || |||||||||| | |||||||||||    
T  38715271 ccaaacataaatcactttacacttaactcaattttaactaaaatcaattctgcaaaatcaattcaattaaaatcaattt 38715193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 435 - 473
Target Start/End: Original strand, 43550937 - 43550975
Alignment:
Q  435 tccaaacataaatcattttacattcaactcacttttaac 473  Q
    ||||||||||||||| || ||||||||||||||||||||    
T  43550937 tccaaacataaatcaattcacattcaactcacttttaac 43550975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 410 - 471
Target Start/End: Complemental strand, 36447764 - 36447703
Alignment:
Q  410 ttcaactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcactttta 471  Q
    ||||||||| || ||| | ||||| || ||||| ||||||||||| ||||||||||||||||    
T  36447764 ttcaactcagttatacataaatgtatctaaacacaaatcattttatattcaactcactttta 36447703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 435 - 472
Target Start/End: Original strand, 36779437 - 36779474
Alignment:
Q  435 tccaaacataaatcattttacattcaactcacttttaa 472  Q
    ||||||||||||| | ||||||||||||||||||||||    
T  36779437 tccaaacataaattactttacattcaactcacttttaa 36779474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 435 - 500
Target Start/End: Original strand, 38516344 - 38516409
Alignment:
Q  435 tccaaacataaatcattttacattcaactcacttttaactaaagtcgagtttacataatcaattca 500  Q
    ||||||||||||||| ||||||||||||||||| ||| | ||| || | | |||| ||||||||||    
T  38516344 tccaaacataaatcactttacattcaactcactattatcgaaaatcaattctacaaaatcaattca 38516409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 429 - 470
Target Start/End: Complemental strand, 38875252 - 38875211
Alignment:
Q  429 aatgtgtccaaacataaatcattttacattcaactcactttt 470  Q
    ||||| ||||||||||||||| |||||||| |||||||||||    
T  38875252 aatgtatccaaacataaatcactttacattgaactcactttt 38875211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 329 - 372
Target Start/End: Complemental strand, 5997418 - 5997374
Alignment:
Q  329 attttgacatgtttggatg-tttccagtaaaattgattttgcctc 372  Q
    ||||||||||||||||||| |||  ||||||||||||||||||||    
T  5997418 attttgacatgtttggatgtttttgagtaaaattgattttgcctc 5997374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 413 - 513
Target Start/End: Original strand, 40491650 - 40491750
Alignment:
Q  413 aactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcacttttaactaaagtcgagtttacataatcaattcattaaaaatcaat 512  Q
    ||||||||| ||| ||||||| |||||| |||||||| ||||| |||||||||||||||   ||| || | |||||| |||||||||| | |||||||||    
T  40491650 aactcacttttacatgaatgtatccaaaaataaatcactttaccttcaactcacttttagtcaaaatcaattttacagaatcaattcactcaaaatcaat 40491749  T
Q  513 t 513  Q
    |    
T  40491750 t 40491750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 427 - 512
Target Start/End: Complemental strand, 15311274 - 15311189
Alignment:
Q  427 tgaatgtgtccaaacataaatcattttacattcaactcacttttaactaaagtcgagtttacataatcaattcattaaaaatcaat 512  Q
    ||||||| ||||||||||||||| | ||||||||||||||||||||| | | || | |||||| ||||||||  || |||||||||    
T  15311274 tgaatgtatccaaacataaatcactatacattcaactcacttttaaccatattcaattttacacaatcaattagttcaaaatcaat 15311189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 410 - 475
Target Start/End: Complemental strand, 40561774 - 40561709
Alignment:
Q  410 ttcaactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcacttttaacta 475  Q
    |||||||||||| ||| ||||||| ||||||||||||||| ||||| ||||||||| |||| ||||    
T  40561774 ttcaactcacttttacatgaatgtatccaaacataaatcactttactttcaactcaatttttacta 40561709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 437 - 477
Target Start/End: Complemental strand, 26975345 - 26975305
Alignment:
Q  437 caaacataaatcattttacattcaactcacttttaactaaa 477  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  26975345 caaacataaatcattttacattcaactcacttataactaaa 26975305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 411 - 471
Target Start/End: Original strand, 45557435 - 45557495
Alignment:
Q  411 tcaactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcactttta 471  Q
    ||||||||||| ||| ||||||| |||||||| |||||| ||||| |||||||||||||||    
T  45557435 tcaactcacttttacatgaatgtatccaaacacaaatcactttaccttcaactcactttta 45557495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 416 - 470
Target Start/End: Complemental strand, 18350174 - 18350120
Alignment:
Q  416 tcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcactttt 470  Q
    |||||| | ||||||||| |  |||||||||||||||||||||||||||||||||    
T  18350174 tcactttttcgtgaatgtatgtaaacataaatcattttacattcaactcactttt 18350120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 439 - 513
Target Start/End: Complemental strand, 42481877 - 42481803
Alignment:
Q  439 aacataaatcattttacattcaactcacttttaactaaagtcgagtttacataatcaattcattaaaaatcaatt 513  Q
    ||||||||||||||||||||||||||||||||    | | || | ||||||||||||||||| | ||||||||||    
T  42481877 aacataaatcattttacattcaactcactttttttcagaatcaattttacataatcaattcacttaaaatcaatt 42481803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 427 - 471
Target Start/End: Complemental strand, 29829368 - 29829324
Alignment:
Q  427 tgaatgtgtccaaacataaatcattttacattcaactcactttta 471  Q
    ||||||| ||||||||||||||| ||||||||||||||| |||||    
T  29829368 tgaatgtatccaaacataaatcactttacattcaactcattttta 29829324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 429 - 473
Target Start/End: Original strand, 38230121 - 38230165
Alignment:
Q  429 aatgtgtccaaacataaatcattttacattcaactcacttttaac 473  Q
    ||||| ||||||||||||||| || ||||||||||||||||||||    
T  38230121 aatgtatccaaacataaatcaattcacattcaactcacttttaac 38230165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 435 - 473
Target Start/End: Complemental strand, 42752241 - 42752203
Alignment:
Q  435 tccaaacataaatcattttacattcaactcacttttaac 473  Q
    ||||||||||||||| || ||||||||||||||||||||    
T  42752241 tccaaacataaatcaattcacattcaactcacttttaac 42752203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 435 - 473
Target Start/End: Original strand, 48459769 - 48459807
Alignment:
Q  435 tccaaacataaatcattttacattcaactcacttttaac 473  Q
    ||||||||||||||| || ||||||||||||||||||||    
T  48459769 tccaaacataaatcaattcacattcaactcacttttaac 48459807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 435 - 472
Target Start/End: Original strand, 4228606 - 4228643
Alignment:
Q  435 tccaaacataaatcattttacattcaactcacttttaa 472  Q
    ||||||||||||||| ||| ||||||||||||||||||    
T  4228606 tccaaacataaatcacttttcattcaactcacttttaa 4228643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 436 - 473
Target Start/End: Complemental strand, 10372007 - 10371970
Alignment:
Q  436 ccaaacataaatcattttacattcaactcacttttaac 473  Q
    |||||||||||||| || ||||||||||||||||||||    
T  10372007 ccaaacataaatcaattcacattcaactcacttttaac 10371970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 410 - 471
Target Start/End: Original strand, 12306792 - 12306853
Alignment:
Q  410 ttcaactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcactttta 471  Q
    |||||||||||| ||| ||||| |  |||||||||||||| ||||  |||||||||||||||    
T  12306792 ttcaactcacttttacatgaatctagccaaacataaatcactttatcttcaactcactttta 12306853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 436 - 473
Target Start/End: Original strand, 20088929 - 20088966
Alignment:
Q  436 ccaaacataaatcattttacattcaactcacttttaac 473  Q
    |||||||||||||| ||||| |||||||||||||||||    
T  20088929 ccaaacataaatcactttacgttcaactcacttttaac 20088966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 470
Target Start/End: Complemental strand, 22310476 - 22310415
Alignment:
Q  409 tttcaactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcactttt 470  Q
    |||||| |||||| |||| |||||| |||||||||||||| |||||  ||||||||| ||||    
T  22310476 tttcaattcacttttacgagaatgtatccaaacataaatctttttatcttcaactcaatttt 22310415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 410 - 471
Target Start/End: Original strand, 27571931 - 27571992
Alignment:
Q  410 ttcaactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcactttta 471  Q
    |||||||||| | ||| | ||||| ||||| ||||||||||||||| || ||||||||||||    
T  27571931 ttcaactcacatttacataaatgtatccaaccataaatcattttacctttaactcactttta 27571992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 392
Target Start/End: Original strand, 45369107 - 45369176
Alignment:
Q  324 attttattttgacatgtttggatgtt-tccagtaaaattgattttgcctcgggaattgattataacttga 392  Q
    |||| ||||||| ||||||||||||| || |||| |||||||||||| ||  ||||||||| ||||||||    
T  45369107 atttgattttgagatgtttggatgttctcaagtagaattgattttgcttctagaattgattttaacttga 45369176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 411 - 471
Target Start/End: Complemental strand, 38123681 - 38123621
Alignment:
Q  411 tcaactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcactttta 471  Q
    ||||||||||| ||| ||||||||||| |||| |||| | ||||| ||||||||| |||||    
T  38123681 tcaactcacttttacatgaatgtgtccgaacacaaattactttaccttcaactcaatttta 38123621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 437 - 473
Target Start/End: Complemental strand, 44967447 - 44967411
Alignment:
Q  437 caaacataaatcattttacattcaactcacttttaac 473  Q
    ||||||||||||| || ||||||||||||||||||||    
T  44967447 caaacataaatcaattcacattcaactcacttttaac 44967411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 410 - 470
Target Start/End: Complemental strand, 15220877 - 15220817
Alignment:
Q  410 ttcaactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcactttt 470  Q
    ||||||||||||  || ||||||| ||||||||||||||| ||||||||||||||||||||    
T  15220877 ttcaactcactttaacatgaatgtatccaaacataaatcactttacattcaactcactttt 15220817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 427 - 472
Target Start/End: Original strand, 3853939 - 3853984
Alignment:
Q  427 tgaatgtgtccaaacataaatcattttacattcaactcacttttaa 472  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||||    
T  3853939 tgaatgtatccaaacataaatcaatttacattcaactcacttttaa 3853984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 410 - 471
Target Start/End: Original strand, 16518847 - 16518908
Alignment:
Q  410 ttcaactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcactttta 471  Q
    |||||||||||| ||| ||||||| |||||||| ||||||||||||  ||||||||||||||    
T  16518847 ttcaactcacttttacatgaatgtatccaaacacaaatcattttaccctcaactcactttta 16518908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 435 - 514
Target Start/End: Original strand, 12110921 - 12111000
Alignment:
Q  435 tccaaacataaatcattttacattcaactcacttttaactaaagtcgagtttacataatcaattcattaaaaatcaattt 514  Q
    ||||||||||||||| |||| |||||||||||||||||| ||| || | || ||| |||||||||  | |||||||||||    
T  12110921 tccaaacataaatcactttatattcaactcacttttaaccaaaatcaatttgacaaaatcaattctatcaaaatcaattt 12111000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 435 - 477
Target Start/End: Complemental strand, 11005752 - 11005710
Alignment:
Q  435 tccaaacataaatcattttacattcaactcacttttaactaaa 477  Q
    ||||||||||||||||||||||||||| ||||| |||||||||    
T  11005752 tccaaacataaatcattttacattcaagtcactattaactaaa 11005710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 435 - 473
Target Start/End: Complemental strand, 23359991 - 23359953
Alignment:
Q  435 tccaaacataaatcattttacattcaactcacttttaac 473  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  23359991 tccaaacataaatcactttacattcaactcacttttaac 23359953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 435 - 471
Target Start/End: Original strand, 10918650 - 10918686
Alignment:
Q  435 tccaaacataaatcattttacattcaactcactttta 471  Q
    ||||||||||||||| |||||||||||||||||||||    
T  10918650 tccaaacataaatcactttacattcaactcactttta 10918686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 410 - 477
Target Start/End: Original strand, 32307153 - 32307220
Alignment:
Q  410 ttcaactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcacttttaactaaa 477  Q
    |||||||||||| || |||||| | |||||| ||||  |||||||||||| ||||| |||||||||||    
T  32307153 ttcaactcacttttatgtgaatttatccaaatataagccattttacattcgactcaattttaactaaa 32307220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 443 - 514
Target Start/End: Original strand, 40704682 - 40704753
Alignment:
Q  443 taaatcattttacattcaactcacttttaactaaagtcgagtttacataatcaattcattaaaaatcaattt 514  Q
    ||||||| ||||||||||| | | ||||||| ||| || | || |||||||||||||||| |||||||||||    
T  40704682 taaatcaatttacattcaaataaattttaaccaaaatcaatttcacataatcaattcattcaaaatcaattt 40704753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 435 - 473
Target Start/End: Complemental strand, 1945100 - 1945062
Alignment:
Q  435 tccaaacataaatcattttacattcaactcacttttaac 473  Q
    ||||||||||||||| || ||||||||||||||||||||    
T  1945100 tccaaacataaatcaattcacattcaactcacttttaac 1945062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 435 - 473
Target Start/End: Original strand, 23377551 - 23377589
Alignment:
Q  435 tccaaacataaatcattttacattcaactcacttttaac 473  Q
    |||||||||||||||  ||||||||||||||||||||||    
T  23377551 tccaaacataaatcaacttacattcaactcacttttaac 23377589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 435 - 477
Target Start/End: Original strand, 31224727 - 31224769
Alignment:
Q  435 tccaaacataaatcattttacattcaactcacttttaactaaa 477  Q
    ||||||||||||||| || |||| |||||||||||||||||||    
T  31224727 tccaaacataaatcaattcacatccaactcacttttaactaaa 31224769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 437 - 514
Target Start/End: Complemental strand, 10618939 - 10618862
Alignment:
Q  437 caaacataaatcattttacattcaactcacttttaactaaagtcgagtttacataatcaattcattaaaaatcaattt 514  Q
    ||||||||| ||| ||||| ||||| ||| ||||| ||| | || | |||||| |||||||||| |||||||||||||    
T  10618939 caaacataattcactttaccttcaattcatttttagctagaatcaattttacaaaatcaattcactaaaaatcaattt 10618862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 436 - 473
Target Start/End: Complemental strand, 30007613 - 30007576
Alignment:
Q  436 ccaaacataaatcattttacattcaactcacttttaac 473  Q
    |||||||||||||| || ||||||||||||||||||||    
T  30007613 ccaaacataaatcaattcacattcaactcacttttaac 30007576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 435 - 472
Target Start/End: Complemental strand, 34433367 - 34433330
Alignment:
Q  435 tccaaacataaatcattttacattcaactcacttttaa 472  Q
    ||||||||||||||| || |||||||||||||||||||    
T  34433367 tccaaacataaatcaattcacattcaactcacttttaa 34433330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 435 - 472
Target Start/End: Complemental strand, 42089589 - 42089552
Alignment:
Q  435 tccaaacataaatcattttacattcaactcacttttaa 472  Q
    ||||||||||||||| || |||||||||||||||||||    
T  42089589 tccaaacataaatcaattcacattcaactcacttttaa 42089552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 438 - 498
Target Start/End: Original strand, 1763270 - 1763330
Alignment:
Q  438 aaacataaatcattttacattcaactcacttttaactaaagtcgagtttacataatcaatt 498  Q
    |||||||||||| |||| |||||||||| ||||||| ||| || | |||||| ||||||||    
T  1763270 aaacataaatcactttaaattcaactcaattttaaccaaaatcaattttacaaaatcaatt 1763330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 444 - 500
Target Start/End: Complemental strand, 3716627 - 3716571
Alignment:
Q  444 aaatcattttacattcaactcacttttaactaaagtcgagtttacataatcaattca 500  Q
    |||||||||||| ||||||||| ||||||||||| |  | |||| ||||||||||||    
T  3716627 aaatcattttaccttcaactcatttttaactaaaataaactttagataatcaattca 3716571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 427 - 471
Target Start/End: Original strand, 4908876 - 4908920
Alignment:
Q  427 tgaatgtgtccaaacataaatcattttacattcaactcactttta 471  Q
    ||||||| ||||||||||||||| |||||||  ||||||||||||    
T  4908876 tgaatgtatccaaacataaatcactttacatgaaactcactttta 4908920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 435 - 471
Target Start/End: Original strand, 8843060 - 8843096
Alignment:
Q  435 tccaaacataaatcattttacattcaactcactttta 471  Q
    |||||||||||||||||||||||||||| || |||||    
T  8843060 tccaaacataaatcattttacattcaacccaatttta 8843096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 439 - 471
Target Start/End: Original strand, 21105561 - 21105593
Alignment:
Q  439 aacataaatcattttacattcaactcactttta 471  Q
    ||||||||||||||||||||||| |||||||||    
T  21105561 aacataaatcattttacattcaattcactttta 21105593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 410 - 477
Target Start/End: Original strand, 22683933 - 22684000
Alignment:
Q  410 ttcaactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcacttttaactaaa 477  Q
    |||||||| ||| ||| | |||||||||||||||||| |||||||| |||||||||||||||| ||||    
T  22683933 ttcaactcgcttttacataaatgtgtccaaacataaaccattttactttcaactcacttttaagtaaa 22684000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 426 - 514
Target Start/End: Complemental strand, 39000619 - 39000531
Alignment:
Q  426 gtgaatgtgtccaaacataaatcattttacattcaactcacttttaactaaagtcgagtttacataatcaattcattaaaaatcaattt 514  Q
    ||||| || |||||||||||||||||||  ||| | |||||||||||||||| || | | |||| |||||||||| | |||||||||||    
T  39000619 gtgaaggtatccaaacataaatcattttttattaagctcacttttaactaaactcaattctacaaaatcaattcaatcaaaatcaattt 39000531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 435 - 513
Target Start/End: Complemental strand, 38740365 - 38740287
Alignment:
Q  435 tccaaacataaatcattttacattcaactcacttttaactaaagtcgagtttacataatcaattcattaaaaatcaatt 513  Q
    ||||||||||||||| || |  ||||||||||||||| | ||| || | |||||| |||||||||||| ||||||||||    
T  38740365 tccaaacataaatcacttcaacttcaactcacttttatccaaaatcaattttacaaaatcaattcattcaaaatcaatt 38740287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 416 - 514
Target Start/End: Original strand, 43868211 - 43868309
Alignment:
Q  416 tcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcacttttaactaaagtcgagtttacataatcaattcattaaaaatcaattt 514  Q
    |||||| ||| | ||||| |||||| | |||||| ||||| ||||||| ||||||||||| | |  | |||||| |||||||||||| |||||||||||    
T  43868211 tcacttttacataaatgtatccaaagacaaatcactttactttcaacttacttttaactagaattaattttacaaaatcaattcattcaaaatcaattt 43868309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 410 - 471
Target Start/End: Original strand, 33843780 - 33843841
Alignment:
Q  410 ttcaactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcactttta 471  Q
    |||||||||||  ||| ||||| | ||||||||||||||| ||||||| |||||||||||||    
T  33843780 ttcaactcactattacatgaatatatccaaacataaatcactttacatccaactcactttta 33843841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 435 - 472
Target Start/End: Original strand, 36150627 - 36150664
Alignment:
Q  435 tccaaacataaatcattttacattcaactcacttttaa 472  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  36150627 tccaaacataaatcactttacattcaactcacttttaa 36150664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 437 - 514
Target Start/End: Original strand, 48575480 - 48575557
Alignment:
Q  437 caaacataaatcattttacattcaactcacttttaactaaagtcgagtttacataatcaattcattaaaaatcaattt 514  Q
    |||| ||||| |||||||||||||||||| ||||| | ||| || | |||||| |||||||||||| ||||| |||||    
T  48575480 caaaaataaaccattttacattcaactcatttttatcaaaaatcaattttacaaaatcaattcattcaaaattaattt 48575557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 429 - 470
Target Start/End: Complemental strand, 54487289 - 54487248
Alignment:
Q  429 aatgtgtccaaacataaatcattttacattcaactcactttt 470  Q
    ||||| ||||||||||||||| ||||||||||||||||||||    
T  54487289 aatgtatccaaacataaatcaatttacattcaactcactttt 54487248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 411 - 471
Target Start/End: Original strand, 25927376 - 25927436
Alignment:
Q  411 tcaactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcactttta 471  Q
    |||| |||||| ||||||||||| || ||| ||||| |||||||| |||||||||||||||    
T  25927376 tcaattcacttttacgtgaatgtatcgaaatataaaacattttactttcaactcactttta 25927436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 330 - 392
Target Start/End: Original strand, 2171738 - 2171801
Alignment:
Q  330 ttttgacatgtttggatgtt-tccagtaaaattgattttgcctcgggaattgattataacttga 392  Q
    |||||||||||||||||||| || ||||||||||| |||||| | ||||||||||  |||||||    
T  2171738 ttttgacatgtttggatgttctcgagtaaaattgactttgcccccggaattgattcgaacttga 2171801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 410 - 469
Target Start/End: Complemental strand, 17898144 - 17898085
Alignment:
Q  410 ttcaactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcacttt 469  Q
    ||||| |||||| ||| | ||| | ||||||||||||||| |||||||||||||||||||    
T  17898144 ttcaattcacttttacctaaatatatccaaacataaatcactttacattcaactcacttt 17898085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 449 - 520
Target Start/End: Complemental strand, 24364169 - 24364098
Alignment:
Q  449 attttacattcaactcacttttaactaaagtcgagtttacataatcaattcattaaaaatcaatttatgtca 520  Q
    ||||||||||||| |||||||||   | | || | ||||||||||||||||||| ||||||||||| |||||    
T  24364169 attttacattcaaatcacttttagtgagaatcaattttacataatcaattcattcaaaatcaatttttgtca 24364098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 410 - 477
Target Start/End: Original strand, 25319117 - 25319184
Alignment:
Q  410 ttcaactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcacttttaactaaa 477  Q
    |||||||||||| ||||| ||||| || |||||||||  | ||||||||||||| |||||||| ||||    
T  25319117 ttcaactcacttttacgtaaatgtatcgaaacataaaaaactttacattcaacttacttttaagtaaa 25319184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 438 - 477
Target Start/End: Original strand, 46382869 - 46382908
Alignment:
Q  438 aaacataaatcattttacattcaactcacttttaactaaa 477  Q
    |||||||||||||||||||||||||| ||||||| |||||    
T  46382869 aaacataaatcattttacattcaacttacttttatctaaa 46382908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 435 - 473
Target Start/End: Original strand, 16566328 - 16566366
Alignment:
Q  435 tccaaacataaatcattttacattcaactcacttttaac 473  Q
    ||||||||||||||| || ||||||||||||||||||||    
T  16566328 tccaaacataaatcaattcacattcaactcacttttaac 16566366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 435 - 473
Target Start/End: Original strand, 22699765 - 22699803
Alignment:
Q  435 tccaaacataaatcattttacattcaactcacttttaac 473  Q
    ||||||||||||||| ||||||||||||| |||||||||    
T  22699765 tccaaacataaatcactttacattcaacttacttttaac 22699803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 435 - 473
Target Start/End: Complemental strand, 22980765 - 22980727
Alignment:
Q  435 tccaaacataaatcattttacattcaactcacttttaac 473  Q
    ||||||||||||||| ||||||||||||| |||||||||    
T  22980765 tccaaacataaatcactttacattcaacttacttttaac 22980727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 435 - 473
Target Start/End: Complemental strand, 22994352 - 22994314
Alignment:
Q  435 tccaaacataaatcattttacattcaactcacttttaac 473  Q
    ||||||||||||||| ||||||||||||| |||||||||    
T  22994352 tccaaacataaatcactttacattcaacttacttttaac 22994314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 435 - 477
Target Start/End: Original strand, 41866177 - 41866219
Alignment:
Q  435 tccaaacataaatcattttacattcaactcacttttaactaaa 477  Q
    ||||||||||||||| || |||| |||||||||||||||||||    
T  41866177 tccaaacataaatcaattcacatccaactcacttttaactaaa 41866219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 435 - 477
Target Start/End: Complemental strand, 52063041 - 52062999
Alignment:
Q  435 tccaaacataaatcattttacattcaactcacttttaactaaa 477  Q
    |||||||| |||||||||||| || ||||||||||||||||||    
T  52063041 tccaaacagaaatcattttaccttaaactcacttttaactaaa 52062999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 435 - 472
Target Start/End: Complemental strand, 14597687 - 14597650
Alignment:
Q  435 tccaaacataaatcattttacattcaactcacttttaa 472  Q
    ||||||||||||||| ||| ||||||||||||||||||    
T  14597687 tccaaacataaatcacttttcattcaactcacttttaa 14597650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 436 - 473
Target Start/End: Complemental strand, 28947811 - 28947774
Alignment:
Q  436 ccaaacataaatcattttacattcaactcacttttaac 473  Q
    |||||||||||||| ||||| |||||||||||||||||    
T  28947811 ccaaacataaatcactttacgttcaactcacttttaac 28947774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 409 - 477
Target Start/End: Complemental strand, 1023935 - 1023867
Alignment:
Q  409 tttcaactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcacttttaactaaa 477  Q
    |||||||||||||  || | ||| | |||||||| |||||| ||||| ||||||||||||||| |||||    
T  1023935 tttcaactcactttcacatcaatatatccaaacaaaaatcactttaccttcaactcacttttagctaaa 1023867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 442 - 502
Target Start/End: Original strand, 12224459 - 12224519
Alignment:
Q  442 ataaatcattttacattcaactcacttttaactaaagtcgagtttacataatcaattcatt 502  Q
    |||||| ||||| ||||||||| ||||||||||||| |  | |||||| ||||||||||||    
T  12224459 ataaattattttgcattcaacttacttttaactaaaataaattttacaaaatcaattcatt 12224519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 437 - 473
Target Start/End: Original strand, 33574203 - 33574239
Alignment:
Q  437 caaacataaatcattttacattcaactcacttttaac 473  Q
    ||||||||||||| || ||||||||||||||||||||    
T  33574203 caaacataaatcaattcacattcaactcacttttaac 33574239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 437 - 473
Target Start/End: Original strand, 54488630 - 54488666
Alignment:
Q  437 caaacataaatcattttacattcaactcacttttaac 473  Q
    ||||||||||||| || ||||||||||||||||||||    
T  54488630 caaacataaatcaattcacattcaactcacttttaac 54488666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 413 - 475
Target Start/End: Original strand, 882758 - 882820
Alignment:
Q  413 aactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcacttttaacta 475  Q
    ||||||||| | | ||||||| ||||||||||||||||||||| ||||||||| |||||||||    
T  882758 aactcacttttgcatgaatgtatccaaacataaatcattttaccttcaactcaattttaacta 882820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 414 - 520
Target Start/End: Original strand, 1499973 - 1500079
Alignment:
Q  414 actcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcacttttaactaaagtcgagtttacataatcaattcattaaaaatcaatt 513  Q
    |||||||| ||| | ||||| | ||||||||||||| |||||| ||||||| |||||| | ||| || | |||||| |||||||||| | ||||||||||    
T  1499973 actcacttttacataaatgtattcaaacataaatcaatttacactcaactcgcttttagccaaaatcaattttacaaaatcaattcagtcaaaatcaatt 1500072  T
Q  514 tatgtca 520  Q
    | |||||    
T  1500073 tttgtca 1500079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 438 - 477
Target Start/End: Original strand, 25208723 - 25208762
Alignment:
Q  438 aaacataaatcattttacattcaactcacttttaactaaa 477  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  25208723 aaacataaatcattttacattcaactcacttttaattaaa 25208762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 405 - 514
Target Start/End: Original strand, 3524989 - 3525098
Alignment:
Q  405 tatctttcaactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcacttttaactaaagtcgagtttacataatcaattcattaa 504  Q
    |||| ||||||| |||| ||| | ||||| | |||| ||||| || ||| ||||||||||||||||| | | | || | ||||||||||||||||||| |    
T  3524989 tatcgttcaactgacttttacataaatgtattcaaatataaaccagtttgcattcaactcacttttagccacaatcaattttacataatcaattcattca 3525088  T
Q  505 aaatcaattt 514  Q
    |||| |||||    
T  3525089 aaattaattt 3525098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 409 - 513
Target Start/End: Original strand, 8856375 - 8856479
Alignment:
Q  409 tttcaactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcacttttaactaaagtcgagtttacataatcaattcattaaaaat 508  Q
    |||||||||||||  || ||||||| |||||||| |||||||||||| ||||||  ||||||||  ||| || | || |||| |||||||  || |||||    
T  8856375 tttcaactcactttcacatgaatgtatccaaacacaaatcattttaccttcaaccaacttttaataaaattcaatttgacatgatcaattttttcaaaat 8856474  T
Q  509 caatt 513  Q
    |||||    
T  8856475 caatt 8856479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 456 - 508
Target Start/End: Complemental strand, 9043774 - 9043722
Alignment:
Q  456 attcaactcacttttaactaaagtcgagtttacataatcaattcattaaaaat 508  Q
    |||||||||||||||||||||| || | | |||| ||||||||||||||||||    
T  9043774 attcaactcacttttaactaaaatcaattatacaaaatcaattcattaaaaat 9043722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 437 - 477
Target Start/End: Original strand, 20846423 - 20846463
Alignment:
Q  437 caaacataaatcattttacattcaactcacttttaactaaa 477  Q
    ||||||||||||||||||||||| ||||| |||||||||||    
T  20846423 caaacataaatcattttacattctactcatttttaactaaa 20846463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 409 - 465
Target Start/End: Original strand, 34620954 - 34621010
Alignment:
Q  409 tttcaactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactca 465  Q
    ||||||||||||| ||| | ||||| ||||||||||||||| ||||| |||||||||    
T  34620954 tttcaactcacttttacataaatgtatccaaacataaatcactttaccttcaactca 34621010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 409 - 465
Target Start/End: Original strand, 34748391 - 34748447
Alignment:
Q  409 tttcaactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactca 465  Q
    ||||||||||||| ||| | ||||| ||||||||||||||| ||||| |||||||||    
T  34748391 tttcaactcacttttacataaatgtatccaaacataaatcactttaccttcaactca 34748447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 409 - 471
Target Start/End: Complemental strand, 434254 - 434192
Alignment:
Q  409 tttcaactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcactttta 471  Q
    ||||||||||||| |||  |||| | |||||||| |||||||||||| | |||||||||||||    
T  434254 tttcaactcacttttacacgaatatatccaaacacaaatcattttacctgcaactcactttta 434192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 435 - 477
Target Start/End: Complemental strand, 16442413 - 16442371
Alignment:
Q  435 tccaaacataaatcattttacattcaactcacttttaactaaa 477  Q
    ||||||||||||||| || ||||||||||||||| ||||||||    
T  16442413 tccaaacataaatcaattcacattcaactcacttgtaactaaa 16442371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 435 - 473
Target Start/End: Original strand, 16548177 - 16548215
Alignment:
Q  435 tccaaacataaatcattttacattcaactcacttttaac 473  Q
    ||||||||||||||| || ||||||||||||||||||||    
T  16548177 tccaaacataaatcaattcacattcaactcacttttaac 16548215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 435 - 472
Target Start/End: Original strand, 7486524 - 7486561
Alignment:
Q  435 tccaaacataaatcattttacattcaactcacttttaa 472  Q
    ||||||||||||||||||||| || |||||||||||||    
T  7486524 tccaaacataaatcattttaccttaaactcacttttaa 7486561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 416 - 472
Target Start/End: Complemental strand, 8551175 - 8551118
Alignment:
Q  416 tcacttcta-cgtgaatgtgtccaaacataaatcattttacattcaactcacttttaa 472  Q
    ||||||||| ||| || |||||||||||||||||| ||| || |||||||||||||||    
T  8551175 tcacttctatcgtaaaggtgtccaaacataaatcacttttcactcaactcacttttaa 8551118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 432 - 472
Target Start/End: Complemental strand, 3605817 - 3605777
Alignment:
Q  432 gtgtccaaacataaatcattttacattcaactcacttttaa 472  Q
    |||||||||||||||||| ||| || |||||||||||||||    
T  3605817 gtgtccaaacataaatcacttttcactcaactcacttttaa 3605777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 435 - 475
Target Start/End: Complemental strand, 6364614 - 6364574
Alignment:
Q  435 tccaaacataaatcattttacattcaactcacttttaacta 475  Q
    ||||||||||||||||||||| || || |||||||||||||    
T  6364614 tccaaacataaatcattttaccttaaattcacttttaacta 6364574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 435 - 471
Target Start/End: Complemental strand, 29240443 - 29240407
Alignment:
Q  435 tccaaacataaatcattttacattcaactcactttta 471  Q
    ||||||||||||| | |||||||||||||||||||||    
T  29240443 tccaaacataaatgaatttacattcaactcactttta 29240407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 435 - 473
Target Start/End: Original strand, 29759713 - 29759751
Alignment:
Q  435 tccaaacataaatcattttacattcaactcacttttaac 473  Q
    |||||||||||||||||||||||||||||||||||||||    
T  29759713 tccaaacataaatcattttacattcaactcacttttaac 29759751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 448 - 502
Target Start/End: Original strand, 47307505 - 47307559
Alignment:
Q  448 cattttacattcaactcacttttaactaaagtcgagtttacataatcaattcatt 502  Q
    ||||||||||||||||||||||||||||||||| | |||| | ||||||||||||    
T  47307505 cattttacattcaactcacttttaactaaagtcaattttataaaatcaattcatt 47307559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 436 - 513
Target Start/End: Original strand, 13344836 - 13344913
Alignment:
Q  436 ccaaacataaatcattttacattcaactcacttttaactaaagtcgagtttacataatcaattcattaaaaatcaatt 513  Q
    |||||||||||||| ||||| ||||||||||||||||| ||| || | | |||| |||||||||| | ||||||||||    
T  13344836 ccaaacataaatcactttacgttcaactcacttttaaccaaaatcaattctacaaaatcaattcaatcaaaatcaatt 13344913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 410 - 471
Target Start/End: Original strand, 34915135 - 34915196
Alignment:
Q  410 ttcaactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcactttta 471  Q
    |||||||||||| ||| ||||||| | ||||||||||||||||||| | |||||||||||||    
T  34915135 ttcaactcacttttacatgaatgtattcaaacataaatcattttacctgcaactcactttta 34915196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 410 - 471
Target Start/End: Original strand, 35961437 - 35961498
Alignment:
Q  410 ttcaactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcactttta 471  Q
    |||||||||||| ||| ||||||| |  |||||||||||||||||| |||||||||||||||    
T  35961437 ttcaactcacttttacatgaatgtatagaaacataaatcattttaccttcaactcactttta 35961498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 435 - 499
Target Start/End: Original strand, 4347036 - 4347100
Alignment:
Q  435 tccaaacataaatcattttacattcaactcacttttaactaaagtcgagtttacataatcaattc 499  Q
    ||||||||||||||| ||||||||||||||||||||||| ||| || | | |||| |||||||||    
T  4347036 tccaaacataaatcactttacattcaactcacttttaaccaaaatcaattctacaaaatcaattc 4347100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 416 - 472
Target Start/End: Complemental strand, 7301890 - 7301834
Alignment:
Q  416 tcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcacttttaa 472  Q
    |||||| |||||||||||  ||||| |||||||||||||||||||| ||||||||||    
T  7301890 tcacttttacgtgaatgttaccaaatataaatcattttacattcaaatcacttttaa 7301834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 437 - 477
Target Start/End: Complemental strand, 7335941 - 7335901
Alignment:
Q  437 caaacataaatcattttacattcaactcacttttaactaaa 477  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  7335941 caaacataaatcactttacattcaactcacttttaactaaa 7335901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 410 - 521
Target Start/End: Original strand, 12655314 - 12655424
Alignment:
Q  410 ttcaactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcacttttaactaaagtcgagtttacataatcaattcattaaaaatc 509  Q
    |||||||||||| ||| ||||| | || ||||||| | |||| |||||||||||| ||||||| |||| || | || |||||||||||||||  ||||||    
T  12655314 ttcaactcactt-tacatgaatttatctaaacatagaccattctacattcaactcgcttttaagtaaaatcaatttcacataatcaattcatctaaaatc 12655412  T
Q  510 aatttatgtcac 521  Q
     |||| ||||||    
T  12655413 tatttttgtcac 12655424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 409 - 471
Target Start/End: Original strand, 5268287 - 5268349
Alignment:
Q  409 tttcaactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcactttta 471  Q
    ||||||||||||| ||| ||||| | | |||||| |||||| |||||||||||||||||||||    
T  5268287 tttcaactcacttttacatgaatatattcaaacaaaaatcactttacattcaactcactttta 5268349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 416 - 473
Target Start/End: Complemental strand, 44786928 - 44786871
Alignment:
Q  416 tcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcacttttaac 473  Q
    |||||| ||| ||||||| | | ||||||||||||||||||||||||||| |||||||    
T  44786928 tcacttttacatgaatgtattcgaacataaatcattttacattcaactcatttttaac 44786871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 435 - 511
Target Start/End: Complemental strand, 3887439 - 3887364
Alignment:
Q  435 tccaaacataaatcattttacattcaactcacttttaactaaagtcgagtttacataatcaattcattaaaaatcaa 511  Q
    |||||||||||| ||||||||||| ||||||| |||| ||||| || | |||||| || ||||||||| ||||||||    
T  3887439 tccaaacataaaacattttacattgaactcacctttatctaaaatc-attttacaaaaccaattcattcaaaatcaa 3887364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 437 - 477
Target Start/End: Original strand, 32365143 - 32365183
Alignment:
Q  437 caaacataaatcattttacattcaactcacttttaactaaa 477  Q
    ||||||||||||| |||||||||||||||||||| ||||||    
T  32365143 caaacataaatcaatttacattcaactcacttttgactaaa 32365183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 410 - 461
Target Start/End: Complemental strand, 213297 - 213246
Alignment:
Q  410 ttcaactcacttctacgtgaatgtgtccaaacataaatcattttacattcaa 461  Q
    |||||||||||| ||| || |||| ||||||||||||||| |||||||||||    
T  213297 ttcaactcacttttacatgcatgtatccaaacataaatcactttacattcaa 213246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 434 - 513
Target Start/End: Original strand, 40642990 - 40643069
Alignment:
Q  434 gtccaaacataaatcattttacattcaactcacttttaactaaagtcgagtttacataatcaattcattaaaaatcaatt 513  Q
    |||||||||||||||| |||||||||||||  || ||| | ||| || | |||||| |||||||||| | ||||||||||    
T  40642990 gtccaaacataaatcactttacattcaacttgctcttatccaaaatcaattttacagaatcaattcactcaaaatcaatt 40643069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 410 - 465
Target Start/End: Complemental strand, 48549030 - 48548975
Alignment:
Q  410 ttcaactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactca 465  Q
    |||||||||||| ||| | ||||| || |||||||||||||||||| |||||||||    
T  48549030 ttcaactcacttttacataaatgtatcaaaacataaatcattttaccttcaactca 48548975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 435 - 473
Target Start/End: Original strand, 1199889 - 1199927
Alignment:
Q  435 tccaaacataaatcattttacattcaactcacttttaac 473  Q
    ||||||||||||||| || ||||||||||||||||||||    
T  1199889 tccaaacataaatcaattcacattcaactcacttttaac 1199927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 435 - 473
Target Start/End: Complemental strand, 20800341 - 20800303
Alignment:
Q  435 tccaaacataaatcattttacattcaactcacttttaac 473  Q
    ||||||||||||||| || ||||||||||||||||||||    
T  20800341 tccaaacataaatcaattcacattcaactcacttttaac 20800303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 427 - 473
Target Start/End: Original strand, 33693088 - 33693134
Alignment:
Q  427 tgaatgtgtccaaacataaatcattttacattcaactcacttttaac 473  Q
    ||||||| ||||||||||||||| ||||| |||||||| ||||||||    
T  33693088 tgaatgtatccaaacataaatcactttacgttcaactcgcttttaac 33693134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 435 - 473
Target Start/End: Complemental strand, 35569266 - 35569228
Alignment:
Q  435 tccaaacataaatcattttacattcaactcacttttaac 473  Q
    ||||||||||||||| || ||||||||||||||||||||    
T  35569266 tccaaacataaatcaattcacattcaactcacttttaac 35569228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 435 - 473
Target Start/End: Original strand, 40352453 - 40352491
Alignment:
Q  435 tccaaacataaatcattttacattcaactcacttttaac 473  Q
    ||||||||||||||| |||||||| ||||||||||||||    
T  40352453 tccaaacataaatcactttacattaaactcacttttaac 40352491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 435 - 473
Target Start/End: Original strand, 48510970 - 48511008
Alignment:
Q  435 tccaaacataaatcattttacattcaactcacttttaac 473  Q
    ||||||||||||||| || ||||||||||||||||||||    
T  48510970 tccaaacataaatcaattcacattcaactcacttttaac 48511008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 437 - 471
Target Start/End: Complemental strand, 50751290 - 50751256
Alignment:
Q  437 caaacataaatcattttacattcaactcactttta 471  Q
    |||||||||||||||||||||| ||||||||||||    
T  50751290 caaacataaatcattttacatttaactcactttta 50751256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 410 - 471
Target Start/End: Original strand, 7524182 - 7524243
Alignment:
Q  410 ttcaactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcactttta 471  Q
    |||||||||||| ||| | |||||||||||||| |||||| ||||| || | ||||||||||    
T  7524182 ttcaactcacttttacataaatgtgtccaaacacaaatcactttaccttgagctcactttta 7524243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 439 - 516
Target Start/End: Complemental strand, 26253101 - 26253024
Alignment:
Q  439 aacataaatcattttacattcaactcacttttaactaaagtcgagtttacataatcaattcattaaaaatcaatttat 516  Q
    ||||||||| ||||||| ||||||||| ||||||    | |||| |||||| |||||||||||| |||| ||||||||    
T  26253101 aacataaatgattttactttcaactcatttttaaaccgaatcgattttacagaatcaattcattcaaaaccaatttat 26253024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 443 - 471
Target Start/End: Original strand, 3819719 - 3819747
Alignment:
Q  443 taaatcattttacattcaactcactttta 471  Q
    |||||||||||||||||||||||||||||    
T  3819719 taaatcattttacattcaactcactttta 3819747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 438 - 521
Target Start/End: Complemental strand, 18325377 - 18325296
Alignment:
Q  438 aaacataaatcattttacattcaactcacttttaactaaagtcgagtttacataatcaattcattaaaaatcaatttatgtcac 521  Q
    ||||| ||| ||||||||||||||||||||||||  |||| || | |||||| || ||||||||  |||| |||||| ||||||    
T  18325377 aaacagaaaccattttacattcaactcacttttatgtaaaatcaattttacaaaaccaattcat--aaaaccaatttttgtcac 18325296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 411 - 471
Target Start/End: Complemental strand, 42423202 - 42423142
Alignment:
Q  411 tcaactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcactttta 471  Q
    ||||| ||||| |||||||| |||| ||| |||||| || |||| ||||||||||||||||    
T  42423202 tcaacccacttttacgtgaacgtgttcaatcataaaccactttatattcaactcactttta 42423142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 435 - 471
Target Start/End: Complemental strand, 47978425 - 47978389
Alignment:
Q  435 tccaaacataaatcattttacattcaactcactttta 471  Q
    ||||| ||||||||| |||||||||||||||||||||    
T  47978425 tccaaccataaatcactttacattcaactcactttta 47978389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 435 - 514
Target Start/End: Complemental strand, 15320 - 15241
Alignment:
Q  435 tccaaacataaatcattttacattcaactcacttttaactaaagtcgagtttacataatcaattcattaaaaatcaattt 514  Q
    ||||||||||||||| |||| |||||||||||||||||| ||| || | || ||| |||||||||  | |||||||||||    
T  15320 tccaaacataaatcactttatattcaactcacttttaaccaaaatcaatttgacaaaatcaattctatcaaaatcaattt 15241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 427 - 510
Target Start/End: Original strand, 29922986 - 29923069
Alignment:
Q  427 tgaatgtgtccaaacataaatcattttacattcaactcacttttaactaaagtcgagtttacataatcaattcattaaaaatca 510  Q
    ||||||| ||||||||||||| | || ||||||||||||||| ||   ||| || | ||||||||||||||||||| |||||||    
T  29922986 tgaatgtatccaaacataaattacttcacattcaactcacttatagtcaaaatcaattttacataatcaattcattcaaaatca 29923069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 435 - 477
Target Start/End: Complemental strand, 2483774 - 2483732
Alignment:
Q  435 tccaaacataaatcattttacattcaactcacttttaactaaa 477  Q
    ||||||||||||||| || ||||||||||||||||||||||||    
T  2483774 tccaaacataaatcaattcacattcaactcacttttaactaaa 2483732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 435 - 477
Target Start/End: Complemental strand, 2868413 - 2868371
Alignment:
Q  435 tccaaacataaatcattttacattcaactcacttttaactaaa 477  Q
    ||||||| ||||||| |||||||||||||||||||||||||||    
T  2868413 tccaaacttaaatcactttacattcaactcacttttaactaaa 2868371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 427 - 465
Target Start/End: Original strand, 4306598 - 4306636
Alignment:
Q  427 tgaatgtgtccaaacataaatcattttacattcaactca 465  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  4306598 tgaatgtatccaaacataaatcattttacattcaactca 4306636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 435 - 473
Target Start/End: Original strand, 22811078 - 22811116
Alignment:
Q  435 tccaaacataaatcattttacattcaactcacttttaac 473  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  22811078 tccaaacataaatcactttacattcaactcacttttaac 22811116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 437 - 470
Target Start/End: Original strand, 24036627 - 24036660
Alignment:
Q  437 caaacataaatcattttacattcaactcactttt 470  Q
    ||||||||||||||||||||||||||||||||||    
T  24036627 caaacataaatcattttacattcaactcactttt 24036660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 438 - 498
Target Start/End: Complemental strand, 5465458 - 5465398
Alignment:
Q  438 aaacataaatcattttacattcaactcacttttaactaaagtcgagtttacataatcaatt 498  Q
    |||||||||||||||| ||||||| ||||||||| ||||| || | |||||| ||||||||    
T  5465458 aaacataaatcatttttcattcaattcacttttatctaaaatcaattttacaaaatcaatt 5465398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 438 - 498
Target Start/End: Original strand, 6988217 - 6988277
Alignment:
Q  438 aaacataaatcattttacattcaactcacttttaactaaagtcgagtttacataatcaatt 498  Q
    ||||||||||||||||| |||||||| |||||||| |||| || | |||||| ||||||||    
T  6988217 aaacataaatcattttaaattcaacttacttttaattaaaatcaattttacaaaatcaatt 6988277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 329 - 392
Target Start/End: Original strand, 10898672 - 10898736
Alignment:
Q  329 attttgacatgtttggatgtt-tccagtaaaattgattttgcctcgggaattgattataacttga 392  Q
    |||||||||||||||| || | || ||||||||||||||||||||  ||||||||| ||||||||    
T  10898672 attttgacatgtttggttgctctcgagtaaaattgattttgcctctagaattgattctaacttga 10898736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 413 - 477
Target Start/End: Complemental strand, 10957268 - 10957205
Alignment:
Q  413 aactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcacttttaactaaa 477  Q
    ||||||||| ||||| |||||  | ||||||||||||||| |||||||| |||||||||||||||    
T  10957268 aactcacttgtacgtaaatgtaacaaaacataaatcattt-acattcaagtcacttttaactaaa 10957205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 410 - 477
Target Start/End: Complemental strand, 28304888 - 28304821
Alignment:
Q  410 ttcaactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcacttttaactaaa 477  Q
    |||||| ||||  ||||||||| | |||||| |||||||||||  ||||||||||| |||||||||||    
T  28304888 ttcaacccactgttacgtgaatatatccaaatataaatcatttcccattcaactcatttttaactaaa 28304821  T

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Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 435 - 473
Target Start/End: Original strand, 19784865 - 19784903
Alignment:
Q  435 tccaaacataaatcattttacattcaactcacttttaac 473  Q
    |||||||||||| || |||||||||||||||||||||||    
T  19784865 tccaaacataaaccactttacattcaactcacttttaac 19784903  T

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Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 435 - 473
Target Start/End: Original strand, 22482241 - 22482279
Alignment:
Q  435 tccaaacataaatcattttacattcaactcacttttaac 473  Q
    ||||||||||||||| || ||||||||||||||||||||    
T  22482241 tccaaacataaatcaattcacattcaactcacttttaac 22482279  T

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Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 410 - 500
Target Start/End: Complemental strand, 35139039 - 35138949
Alignment:
Q  410 ttcaactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcacttttaactaaagtcgagtttacataatcaattca 500  Q
    ||||||||||||  |  ||||||| ||  ||||||||||||||||| ||||||||| |||||   | | || |||||||||||||||||||    
T  35139039 ttcaactcactttcatatgaatgtatctgaacataaatcattttaccttcaactcaattttagacagaatcaagtttacataatcaattca 35138949  T

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Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 439 - 473
Target Start/End: Complemental strand, 35817019 - 35816985
Alignment:
Q  439 aacataaatcattttacattcaactcacttttaac 473  Q
    ||||||||| |||||||||||||||||||||||||    
T  35817019 aacataaattattttacattcaactcacttttaac 35816985  T

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Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 320 - 389
Target Start/End: Original strand, 38045390 - 38045460
Alignment:
Q  320 gcaaattttattttgacatgtttggatgtt-tccagtaaaattgattttgcctcgggaattgattataact 389  Q
    ||||| || ||||||||||||||| ||||| || |||| ||||||||||||||| || ||||||| |||||    
T  38045390 gcaaaattgattttgacatgtttgaatgttctcaagtagaattgattttgcctccggtattgattttaact 38045460  T

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Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 498
Target Start/End: Complemental strand, 10273357 - 10273268
Alignment:
Q  409 tttcaactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcacttttaactaaagtcgagtttacataatcaatt 498  Q
    ||||||| ||||| ||||  ||||| | ||| |||||||||||||| ||||||||||||| ||| |||| |  | |||||| ||||||||    
T  10273357 tttcaacccacttgtacgaaaatgtattcaagcataaatcattttatattcaactcacttataagtaaaattaattttacaaaatcaatt 10273268  T

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Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 392
Target Start/End: Original strand, 29922575 - 29922640
Alignment:
Q  328 tattttgacatgtttggatgtt-tccagtaaaattgattttgcctcgggaattgattataacttga 392  Q
    ||||||||||||||||  |||| || |||| |||||||||||||||  ||||||||| ||||||||    
T  29922575 tattttgacatgtttgattgttctctagtagaattgattttgcctcaagaattgattttaacttga 29922640  T

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Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 431 - 472
Target Start/End: Original strand, 40885259 - 40885300
Alignment:
Q  431 tgtgtccaaacataaatcattttacattcaactcacttttaa 472  Q
    ||||||||||||||||||| || |||| ||||||||||||||    
T  40885259 tgtgtccaaacataaatcaattcacatccaactcacttttaa 40885300  T

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Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 435 - 472
Target Start/End: Complemental strand, 43152423 - 43152386
Alignment:
Q  435 tccaaacataaatcattttacattcaactcacttttaa 472  Q
    ||||||||||||||| ||| ||||||||||||||||||    
T  43152423 tccaaacataaatcacttttcattcaactcacttttaa 43152386  T

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Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 437 - 513
Target Start/End: Original strand, 14299422 - 14299498
Alignment:
Q  437 caaacataaatcattttacattcaactcacttttaactaaagtcgagtttacataatcaattcattaaaaatcaatt 513  Q
    |||||| |||||| ||||| ||||||||||||||| ||| | || | |||||| |||||||||| | ||||| ||||    
T  14299422 caaacacaaatcactttaccttcaactcacttttatctagaatcaattttacacaatcaattcactcaaaataaatt 14299498  T

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Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 412 - 520
Target Start/End: Original strand, 14671096 - 14671203
Alignment:
Q  412 caactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcacttttaactaaagtcgagtttacataatcaattcattaaaaatcaa 511  Q
    |||||||||| ||| ||||||  ||||||||||||| | || |||||||| ||||||||| | | | || | || ||| |||||||||||| |||||||     
T  14671096 caactcacttttacatgaatgcatccaaacataaat-acttcacattcaattcacttttagccataatcaatttcacaaaatcaattcattcaaaatcat 14671194  T
Q  512 tttatgtca 520  Q
    ||| |||||    
T  14671195 tttttgtca 14671203  T

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Target: scaffold0393 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0393
Description:

Target: scaffold0393; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 327 - 392
Target Start/End: Complemental strand, 12444 - 12378
Alignment:
Q  327 ttattttgacatgtttggatgtt-tccagtaaaattgattttgcctcgggaattgattataacttga 392  Q
    ||||||||||||||||||||||| || |||| |||||||||||||||  ||| ||||| ||||||||    
T  12444 ttattttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttga 12378  T

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Target: scaffold0361 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 409 - 465
Target Start/End: Complemental strand, 14131 - 14075
Alignment:
Q  409 tttcaactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactca 465  Q
    |||||||||||||  || ||||||| ||||||||||||||| ||||| |||||||||    
T  14131 tttcaactcactttcacatgaatgtatccaaacataaatcactttaccttcaactca 14075  T

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Target: scaffold0031 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 436 - 477
Target Start/End: Original strand, 99701 - 99742
Alignment:
Q  436 ccaaacataaatcattttacattcaactcacttttaactaaa 477  Q
    |||||||||||| | |||||||||||||||||||||| ||||    
T  99701 ccaaacataaattaatttacattcaactcacttttaattaaa 99742  T

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Target: scaffold0031; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 437 - 477
Target Start/End: Original strand, 99918 - 99958
Alignment:
Q  437 caaacataaatcattttacattcaactcacttttaactaaa 477  Q
    ||||||||||| | |||||||||||||||||||||| ||||    
T  99918 caaacataaattaatttacattcaactcacttttaattaaa 99958  T

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Target: scaffold0009 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 436 - 473
Target Start/End: Complemental strand, 199431 - 199394
Alignment:
Q  436 ccaaacataaatcattttacattcaactcacttttaac 473  Q
    |||||||||||||| ||||| |||||||||||||||||    
T  199431 ccaaacataaatcactttacgttcaactcacttttaac 199394  T

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Target: scaffold0005 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 435 - 472
Target Start/End: Original strand, 219691 - 219728
Alignment:
Q  435 tccaaacataaatcattttacattcaactcacttttaa 472  Q
    ||||||||||||||| ||| ||||||||||||||||||    
T  219691 tccaaacataaatcacttttcattcaactcacttttaa 219728  T

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Target: scaffold0024 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 405 - 473
Target Start/End: Complemental strand, 23614 - 23546
Alignment:
Q  405 tatctttcaactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcacttttaac 473  Q
    |||| |||||||||||| ||| | ||||  ||| |||||||| |  |||||||||||||||||||||||    
T  23614 tatcattcaactcacttttacttaaatgcatcctaacataaaccgctttacattcaactcacttttaac 23546  T

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Target: scaffold0015 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 435 - 499
Target Start/End: Original strand, 65538 - 65602
Alignment:
Q  435 tccaaacataaatcattttacattcaactcacttttaactaaagtcgagtttacataatcaattc 499  Q
    ||||||||||||||| |||||||| |||||| ||||||| ||| || | || ||| |||||||||    
T  65538 tccaaacataaatcactttacattaaactcatttttaaccaaaatcaatttcacagaatcaattc 65602  T

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