View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5789-Insertion-5 (Length: 313)
Name: NF5789-Insertion-5
Description: NF5789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5789-Insertion-5 |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 8 - 231
Target Start/End: Complemental strand, 41181191 - 41180968
Alignment:
| Q |
8 |
aaactcagatgcaagaagagagttgtgttaagcttgagcagcaaacttaaaacatcgtatgatctatatgacatgaatcgaatatgcaatattatgaagg |
107 |
Q |
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| T |
41181191 |
aaactcatatgaaagaagagagttgtgttaagcttaagcagcaaacttaaaacatcgtctgatctatatgacatgaatcgaatatacaatagtatgaagg |
41181092 |
T |
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| Q |
108 |
ctaggttgttgtcaaaaagcaacaaaccgtataacctaagtacaatgtcaaatgagcaatggccactgcattgccgtctgattgcaatgaaaaataatta |
207 |
Q |
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| T |
41181091 |
ctaggttgttgtcaaaaagcaacaaaccgtataacctaagtacaatgtcaaatgagcagtggccactgcattgccgtttgattgcaatgaaaaataatta |
41180992 |
T |
|
| Q |
208 |
agggtttccacatttttcgcgaac |
231 |
Q |
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| T |
41180991 |
agggttcccacatttttcgtgaac |
41180968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 247 - 289
Target Start/End: Complemental strand, 41180916 - 41180874
Alignment:
| Q |
247 |
aacccaagtacaacagttaccacattacaaaccaaccaaaagc |
289 |
Q |
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| T |
41180916 |
aacccaagtacaacagttaccacattacaaaccaaccaaaagc |
41180874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 153 - 220
Target Start/End: Original strand, 9256425 - 9256492
Alignment:
| Q |
153 |
tgtcaaatgagcaatggccactgcattgccgtctgattgcaatgaaaaataattaagggtttccacat |
220 |
Q |
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| T |
9256425 |
tgtcagatgagcaagggccactgcattgccgtctgaatgcaatgaaaaataagtaagggttcccacat |
9256492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 241 - 289
Target Start/End: Complemental strand, 43340068 - 43340020
Alignment:
| Q |
241 |
ggcctgaacccaagtacaacagttaccacattacaaaccaaccaaaagc |
289 |
Q |
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| T |
43340068 |
ggcctgaatccaagtacaacagttatcacattacaaacaaaccaaaagc |
43340020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 220
Target Start/End: Complemental strand, 15218219 - 15218145
Alignment:
| Q |
146 |
agtacaatgtcaaatgagcaatggccactgcattgccgtctgattgcaatgaaaaataattaagggtttccacat |
220 |
Q |
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| T |
15218219 |
agtacagtgtcaaatgagcaagggccgctgcattgccgcctggatgtagtgaaaaataagcaagggttcccacat |
15218145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 220
Target Start/End: Complemental strand, 27453102 - 27453028
Alignment:
| Q |
146 |
agtacaatgtcaaatgagcaatggccactgcattgccgtctgattgcaatgaaaaataattaagggtttccacat |
220 |
Q |
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||||||||||||||||||||| |||| |||||| ||| ||| || | |||||||||| |||||||||||||| |
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| T |
27453102 |
agtacaatgtcaaatgagcaagggccgctgcatcaccgcctggatgtagtgaaaaataagcaagggtttccacat |
27453028 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 220
Target Start/End: Complemental strand, 45329591 - 45329517
Alignment:
| Q |
146 |
agtacaatgtcaaatgagcaatggccactgcattgccgtctgattgcaatgaaaaataattaagggtttccacat |
220 |
Q |
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|||||| |||||||||| ||| ||||||||||| |||||||| || | |||||||||| ||||||| |||||| |
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| T |
45329591 |
agtacagtgtcaaatgaacaagggccactgcatcgccgtctggatgtagtgaaaaataagcaagggttcccacat |
45329517 |
T |
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