View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5789_high_6 (Length: 295)
Name: NF5789_high_6
Description: NF5789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5789_high_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 20 - 284
Target Start/End: Complemental strand, 10969460 - 10969196
Alignment:
| Q |
20 |
cgagtccctttgtaaatttgtcatgcctttttaacaaccttctcgaactctctaaaagaaacttgtcaacaaatttttcatcagaaagcattgaagcaag |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10969460 |
cgagtccctttgtaaatttgtcatgcctttttaacaaccttctcgaactctctaaaagaaacttgtcaacaaatttttcatcagaaagcattgaagcaag |
10969361 |
T |
|
| Q |
120 |
catgtattgagtttgagatgagactaatccaaagcttgacattttccttccacaattcaccacttgatcattgtatgaataaactatcccaaccctaaaa |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10969360 |
catgtattgagtttgagatgagactaatccaaagcttgacattttccttccacaattcaccacttgatcattgtatgaataaactatcccaaccctaaaa |
10969261 |
T |
|
| Q |
220 |
ccaggaaaccctaagtctttcgataaactataaataacatgaatgagatcaaggttgcacttcat |
284 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10969260 |
ccaggaaaccctaagtctttcgataaactataaataacatgaatgagatcaaggttgcacttcat |
10969196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 30 - 245
Target Start/End: Original strand, 7754495 - 7754706
Alignment:
| Q |
30 |
tgtaaatttgtcatgcctttttaacaaccttctcgaactctctaaaagaaacttgtcaacaaatttttcatcagaaagcattgaag---caagcatgtat |
126 |
Q |
| |
|
||||||||| |||||||||||||||||| |||| || ||||||||| ||| |||||||||||||||||| | |||||||||||| || ||| | | |
|
|
| T |
7754495 |
tgtaaatttttcatgcctttttaacaacgttcttgagctctctaaactaaatgtgtcaacaaatttttcattacaaagcattgaaggcgcagacatatgt |
7754594 |
T |
|
| Q |
127 |
tgagtttgagatgagactaatccaaagcttgacattttccttccacaattcaccacttgatcattgtatgaataaactatcccaaccctaaaaccaggaa |
226 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||||| |||||||||| | ||||| || |||||||||||||| |||||||||||| ||| | |
|
|
| T |
7754595 |
tgagtttga-------ctaatccaaaacttgacattttccttacacaattcactgcatgatctttttatgaataaactattccaaccctaaaattaggga |
7754687 |
T |
|
| Q |
227 |
accctaagtctttcgataa |
245 |
Q |
| |
|
|||||||||| || ||||| |
|
|
| T |
7754688 |
accctaagtcctttgataa |
7754706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 136 - 269
Target Start/End: Original strand, 29963865 - 29963998
Alignment:
| Q |
136 |
gatgagactaatccaaagcttgacattttccttccacaattcaccacttgatcattgtatgaataaactatcccaaccctaaaaccaggaaaccctaagt |
235 |
Q |
| |
|
|||||||||||||||||||| |||||||| || || || ||||| |||| ||| ||||| |||||||| | ||||| |||||||| |||| || | || |
|
|
| T |
29963865 |
gatgagactaatccaaagctcgacatttttctaccgcagttcacaacttcatcgttgtacgaataaaccaaaccaactctaaaacccggaagacccatgt |
29963964 |
T |
|
| Q |
236 |
ctttcgataaactataaataacatgaatgagatc |
269 |
Q |
| |
|
|||| ||||||||||| |||| ||||||||||| |
|
|
| T |
29963965 |
cttttgataaactatagataatgtgaatgagatc |
29963998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University