View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5789_low_2 (Length: 503)
Name: NF5789_low_2
Description: NF5789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5789_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 425; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 18 - 493
Target Start/End: Complemental strand, 35072156 - 35071666
Alignment:
| Q |
18 |
attggaaggaaactccagaagcccatgtattcaaagctgatgtaccagggctgaacaaagaggaagtgaaagttgaggttgaagatggaagagtgcttca |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35072156 |
attggaaggaaactccagaagcccatgtattcaaagctgatgtaccagggctgaacaaagaggaagtgaaagttgaggttgaagatggaagagtgcttca |
35072057 |
T |
|
| Q |
118 |
gataacaggagagaggagcatggagagacaagatacaaatgatggatgtcagcgtgttgagcgtagtagtggtaaattcatgaggagttttactcttcca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35072056 |
gataacaggagagaggagcatggagagacaagatacaaatgatggatgtcagcgtgttgagcgtagtagtggtaaattcatgaggagttttactcttcca |
35071957 |
T |
|
| Q |
218 |
gctaactgtaaattggatcaggttaaggcttctattgaagatggtgttcttactgttactgtccctaaggaagaggttaccaaccctgatcgtttgacca |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35071956 |
gctaactgtaaattggatcaggttaaggcttctattgaagatggtgttcttactgttactgtccctaaggaagaggttaccaaccctgatcgtttgacca |
35071857 |
T |
|
| Q |
318 |
atcagagttcacagtgagagtaattatgaaaag---------------ttgaaatttgaatccaaaaatgttccattttggctatttgtttttgtatgtt |
402 |
Q |
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|||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35071856 |
atcagagttcacagtgagagtaataatgaacagttctgttcgtgtggattgaaatttgaatccaaaaatgttccattttggctatttgtttttgtatgtt |
35071757 |
T |
|
| Q |
403 |
agtgattaggaaatgctgttacaaataagaaacgtgtgtgtatcataagcattaatacgggttagataaagcacctacgtgatgatgtcca |
493 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |
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| T |
35071756 |
agtgattaggaaatgctgttacaaataagaaacgtgtgtgtatcataagcattaatacgagttagataaagcacctacgtgttgatgtcca |
35071666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 18 - 209
Target Start/End: Complemental strand, 35072996 - 35072805
Alignment:
| Q |
18 |
attggaaggaaactccagaagcccatgtattcaaagctgatgtaccagggctgaacaaagaggaagtgaaagttgaggttgaagatggaagagtgcttca |
117 |
Q |
| |
|
|||||||||| || |||||||| ||||| ||||| |||||| | || || ||||| || ||||||||||| ||||| ||||||||| || || ||||| |
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| T |
35072996 |
attggaaggagaccccagaagctcatgtgttcaaggctgatcttcctggactgaagaaggaggaagtgaaggttgaaattgaagatgatagggttcttca |
35072897 |
T |
|
| Q |
118 |
gataacaggagagaggagcatggagagacaagatacaaatgatggatgtcagcgtgttgagcgtagtagtggtaaattcatgaggagtttta |
209 |
Q |
| |
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||||| || ||||||| ||| || | | |||||| |||||| ||| || ||||| |||||||| ||||| |||||||||||||| |||| |
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| T |
35072896 |
gataagcggtgagaggaacattgaaaaagaagataagaatgatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggttta |
35072805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 18 - 209
Target Start/End: Original strand, 35106864 - 35107055
Alignment:
| Q |
18 |
attggaaggaaactccagaagcccatgtattcaaagctgatgtaccagggctgaacaaagaggaagtgaaagttgaggttgaagatggaagagtgcttca |
117 |
Q |
| |
|
|||||||||| || |||||||| ||||| ||||| |||||| | || || ||||| || ||||||||||| ||||| ||||||||| || || ||||| |
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| T |
35106864 |
attggaaggagaccccagaagctcatgtgttcaaggctgatcttcctggactgaagaaggaggaagtgaaggttgaaattgaagatgatagggttcttca |
35106963 |
T |
|
| Q |
118 |
gataacaggagagaggagcatggagagacaagatacaaatgatggatgtcagcgtgttgagcgtagtagtggtaaattcatgaggagtttta |
209 |
Q |
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||||| || ||||||| | | || | | |||||| |||||| ||| || ||||| |||||||| ||||| |||||||||||||| |||| |
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| T |
35106964 |
gataagcggtgagaggaactttgaaaaagaagataagaatgatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggttta |
35107055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 209
Target Start/End: Complemental strand, 24041052 - 24040861
Alignment:
| Q |
18 |
attggaaggaaactccagaagcccatgtattcaaagctgatgtaccagggctgaacaaagaggaagtgaaagttgaggttgaagatggaagagtgcttca |
117 |
Q |
| |
|
|||||||||| || |||||||| ||||| ||||| |||||| | || || ||||| || || |||||||| ||||| ||||||||| || || ||||| |
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| T |
24041052 |
attggaaggagaccccagaagcacatgtgttcaaggctgatcttcctggactgaagaaggaagaagtgaaggttgaaattgaagatgatagggttcttca |
24040953 |
T |
|
| Q |
118 |
gataacaggagagaggagcatggagagacaagatacaaatgatggatgtcagcgtgttgagcgtagtagtggtaaattcatgaggagtttta |
209 |
Q |
| |
|
||||| || ||||||| | | || | | |||||| |||||| ||| || ||||| |||||||| ||||| |||||||||||||| |||| |
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| T |
24040952 |
gataagcggtgagaggaacgttgaaaaagaagataagaatgatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggttta |
24040861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 134
Target Start/End: Complemental strand, 24014495 - 24014379
Alignment:
| Q |
18 |
attggaaggaaactccagaagcccatgtattcaaagctgatgtaccagggctgaacaaagaggaagtgaaagttgaggttgaagatggaagagtgcttca |
117 |
Q |
| |
|
|||||||||| || |||||||| ||||| ||||| |||||| | || || ||||| || ||||||||||| ||||| |||||| || || || ||||| |
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|
| T |
24014495 |
attggaaggagaccccagaagcacatgtgttcaaggctgatcttcctggactgaagaaggaggaagtgaaggttgaaattgaaggtgatagggttcttca |
24014396 |
T |
|
| Q |
118 |
gataacaggagagagga |
134 |
Q |
| |
|
||||| |||||||||| |
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|
| T |
24014395 |
gataagcggagagagga |
24014379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 291
Target Start/End: Original strand, 34919170 - 34919235
Alignment:
| Q |
226 |
taaattggatcaggttaaggcttctattgaagatggtgttcttactgttactgtccctaaggaaga |
291 |
Q |
| |
|
|||| ||||||||||||| ||| ||| || |||| ||||||||||||||||| ||||||||||| |
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|
| T |
34919170 |
taaaatggatcaggttaaagctggtatggagaatggggttcttactgttactgttcctaaggaaga |
34919235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 104
Target Start/End: Original strand, 3123082 - 3123163
Alignment:
| Q |
23 |
aaggaaactccagaagcccatgtattcaaagctgatgtaccagggctgaacaaagaggaagtgaaagttgaggttgaagatg |
104 |
Q |
| |
|
|||||||||| |||||| ||||| |||||||||||| | |||||| |||| || || || ||||| ||||| ||||||||| |
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|
| T |
3123082 |
aaggaaactctagaagcacatgtgttcaaagctgatcttccagggttgaagaaggaagaggtgaaggttgaaattgaagatg |
3123163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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