View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5789_low_4 (Length: 413)
Name: NF5789_low_4
Description: NF5789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5789_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 296; Significance: 1e-166; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 395
Target Start/End: Original strand, 7382784 - 7383198
Alignment:
| Q |
1 |
attattctatttccttatccaaacaagacccaaattttgattaacaataacaaacctcaacagcaagagaattacaca---------------------a |
79 |
Q |
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| T |
7382784 |
attattctatttccttatccaaacaagacccaaattttgattaacaataacaaacctcaacagcaagagaattacacagaaagtaaaccaaaccacacaa |
7382883 |
T |
|
| Q |
80 |
ataaaaatccaatttttcctatagcttatcaattatcaacgaaaaagaacacaaacccattattctattctagttccttagccaaacaaacctatatnnn |
179 |
Q |
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| T |
7382884 |
ataaaaatccaatttttcctatagcttatcaattatcaacgaaaaagaacacaaacccattattctattctagttccttagccaaacaaacctatataaa |
7382983 |
T |
|
| Q |
180 |
nnnnnnnnnncccaaatttgaattcacaataacaaacctcaatagcaagagcattactcaagaagtagaccaacccagtaagagcagcaaacatggaaca |
279 |
Q |
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| T |
7382984 |
aaccaaaaa-ccgaaatttgaattcacaataacaaacctcaatagcaagagcattactcaagaagtagaccaacccagtaagagcagcaaacatggaaca |
7383082 |
T |
|
| Q |
280 |
ttcaaccaactgaagtgtcttctgatacacttccccttctggtgacaaatccttaacttcttcattgttgaaaattgccacttcaatatttgaaaccctt |
379 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7383083 |
ttcaaccaactgaagtgtcttctgatacacttccccttctggtgacaaatccttaacttcttcattgttgaaaattgccacttcaatatttgaaaccctt |
7383182 |
T |
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| Q |
380 |
tgaagagggaatgaac |
395 |
Q |
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| T |
7383183 |
tgaagagggaacgaac |
7383198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 89 - 172
Target Start/End: Original strand, 7382367 - 7382450
Alignment:
| Q |
89 |
caatttttcctatagcttatcaattatcaacgaaaaagaacacaaacccattattctattctagttccttagccaaacaaacct |
172 |
Q |
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| T |
7382367 |
caatttttcctatagctaatcaattctcaaccaaaaagaacaaaaacccattattctattctagttccttaaccaaacaaacct |
7382450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 7382568 - 7382640
Alignment:
| Q |
1 |
attattctatttccttatccaaacaagacccaaattttgattaacaataacaaacctcaacagcaagagaatt |
73 |
Q |
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|||| |||||||||||| |||||||||||||||||||| ||| ||||||||||||||||| ||||| ||||| |
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| T |
7382568 |
attaatctatttccttaaccaaacaagacccaaattttaattcacaataacaaacctcaatggcaagtgaatt |
7382640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 5 - 80
Target Start/End: Original strand, 7381646 - 7381721
Alignment:
| Q |
5 |
ttctatttccttatccaaacaagacccaaattttgattaacaataacaaacctcaacagcaagagaattacacaaa |
80 |
Q |
| |
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||||| ||||||| ||||||||||| ||||||||||||||| | |||||||||||| ||||||||| || |||||| |
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| T |
7381646 |
ttctacttccttaaccaaacaagacacaaattttgattaactaaaacaaacctcaatagcaagagatttgcacaaa |
7381721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 190 - 249
Target Start/End: Original strand, 7382596 - 7382655
Alignment:
| Q |
190 |
cccaaatttgaattcacaataacaaacctcaatagcaagagcattactcaagaagtagac |
249 |
Q |
| |
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||||||||| ||||||||||||||||||||||| ||||| | ||| |||||||| ||||| |
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| T |
7382596 |
cccaaattttaattcacaataacaaacctcaatggcaagtgaattgctcaagaaatagac |
7382655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 115 - 169
Target Start/End: Original strand, 7381435 - 7381489
Alignment:
| Q |
115 |
tcaacgaaaaagaacacaaacccattattctattctagttccttagccaaacaaa |
169 |
Q |
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||||| |||||||||||||||||||||| |||||||| ||| ||| ||| ||||| |
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| T |
7381435 |
tcaaccaaaaagaacacaaacccattatcctattctatttcattaaccagacaaa |
7381489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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