View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5789_low_6 (Length: 330)
Name: NF5789_low_6
Description: NF5789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5789_low_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 165; Significance: 3e-88; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 43724622 - 43724941
Alignment:
| Q |
1 |
aacaatattaatacaacaatcaattttcttaatgtctctatttttcaaaa-gggttatataattcgatatgaaagttgtaaatgcagaaatcaaatattc |
99 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
43724622 |
aacaaaattaatacaacaatcaattttcttaatgtctctgtttttcaaaaagggttctataattcgatatgaaagttgtaaatgcagaaatcaaatactc |
43724721 |
T |
|
| Q |
100 |
gatctgttttaaaatgaatgacgtttttcc-agnnnnnnnnnnttatttgaaaaagaatatcattttcgattaccaatgtaataataaatttttctttca |
198 |
Q |
| |
|
|||| |||||||||||| || ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43724722 |
gatccgttttaaaatgagtgtcgtttttccaacaaaaaaaatattatttgaaaaagaatatcattttcgattaccaatgtaataataaatttttctttca |
43724821 |
T |
|
| Q |
199 |
aattgcacattaatttcaattagtcgttg--------aatttatgcataaaaatgtgaaacga-gatcattttaaaatggattgagcaaattccttacct |
289 |
Q |
| |
|
|||||||| |||||||||| |||||| |||||||||||||||| || |||| | |||||||||||||||||||||||||||||||||||| |
|
|
| T |
43724822 |
aattgcac----atttcaattaatcgttgaattttttaatttatgcataaaaacgttaaacaacgatcattttaaaatggattgagcaaattccttacct |
43724917 |
T |
|
| Q |
290 |
acacttacatatcatcaaaagttgc |
314 |
Q |
| |
|
|||| || ||||||||||||||||| |
|
|
| T |
43724918 |
acac-tatatatcatcaaaagttgc |
43724941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University