View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5789_low_9 (Length: 251)
Name: NF5789_low_9
Description: NF5789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5789_low_9 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 11 - 251
Target Start/End: Original strand, 10968906 - 10969146
Alignment:
| Q |
11 |
caaaggttcaattaattcctgtccattgtgatagctccaacaacttcaaaataacaagagaagcacttgaagtagcatacaacaaagcacaagaaaacaa |
110 |
Q |
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| T |
10968906 |
caaaggttcaattaattcctgtccattgtgatagctccaacaacttcaaaataacaagagaagcacttgaagtagcatacaaaaaagcacaagaaaacaa |
10969005 |
T |
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| Q |
111 |
catcaatgtaaaagggttgatcataacaaacccctccaacccattaggaacaaccttagacaaagagacactaaagagtcttataaccttcatcaatgag |
210 |
Q |
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| T |
10969006 |
catcaatgtaaaagggttgatcataacaaacccctccaacccattaggaacaaccttagacaaagagacactaaagagtcttataaccttcatcaatgag |
10969105 |
T |
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| Q |
211 |
aaaacaatccatttagtttgtgatgaaatctatgcagccac |
251 |
Q |
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| T |
10969106 |
aaaacaatccatttagtttgtgatgaaatctatgcagccac |
10969146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 23 - 188
Target Start/End: Complemental strand, 29964294 - 29964129
Alignment:
| Q |
23 |
taattcctgtccattgtgatagctccaacaacttcaaaataacaagagaagcacttgaagtagcatacaacaaagcacaagaaaacaacatcaatgtaaa |
122 |
Q |
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||||||||||||| ||| ||||||| ||||| ||||| |||||||||||||||||||||| ||| | || |||||||||||| | |||||||||||||| |
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| T |
29964294 |
taattcctgtccaatgtcatagctcaaacaatttcaagataacaagagaagcacttgaagaagctcataaaaaagcacaagaagaaaacatcaatgtaaa |
29964195 |
T |
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| Q |
123 |
agggttgatcataacaaacccctccaacccattaggaacaaccttagacaaagagacactaaagag |
188 |
Q |
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| T |
29964194 |
agggttaatcataacaaatccatcaaatcctttaggaacaacattagaaaaagatacactaaagag |
29964129 |
T |
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