View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5790-Insertion-1 (Length: 840)
Name: NF5790-Insertion-1
Description: NF5790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5790-Insertion-1 |
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Alignment Details
Target: chr8 (Bit Score: 622; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 622; E-Value: 0
Query Start/End: Original strand, 8 - 776
Target Start/End: Complemental strand, 37273382 - 37272589
Alignment:
| Q |
8 |
cataccaatcacactattgtgataagaaaataatctac------------cattggtccttatttctcaaagttcactttaccaaatatacttccaa--- |
92 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37273382 |
cataccaatcacactattgtgataagaaaataatctacaaactacaatcccattggtccttatttctcaaagttcactttaccaaatatacttccaaacc |
37273283 |
T |
|
| Q |
93 |
-----------ccaccacttagagccactttctctcattgctcctcagctccaaaattcaaacaccactcacattctcatcaatggcatcaaccatcatt |
181 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
37273282 |
caaaattccaaccaccacttagagtcactttctctcattgctcctcagctccaaaattcaaacaccattcacattctcatcaatggcatcaaccatcatt |
37273183 |
T |
|
| Q |
182 |
gcaatgaccatgatcaacgcaaagtccttgaacactactagttcaccaaagttccacaacccaactaagctcattacaaaccccacttccctcatttctc |
281 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
37273182 |
gcaatgaccatgatcaacgcaaagtccttgaacactactagttcaccaaagttccacaacccaactaagctcattacaaaccccacttccctcatttccc |
37273083 |
T |
|
| Q |
282 |
tcaagaaccttcttccaaagaaaattcccacaacagaaaatattaaactatcaacatccagaggaggta--gcactagcaggggcaatattctcaacact |
379 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||| | ||||||||||||||||||||||||||||| |
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| T |
37273082 |
tcaagaaccttcttccaaagaaaattcccacaacagaaaacattaaactatcaacatccatagcaggaacagcactagcaggggcaatattctcaacact |
37272983 |
T |
|
| Q |
380 |
ctcaacctgtgatgcagcttttgcagcacaacaaatagctgaaatagcagaaggatcatcagacaaccgtggtttagcacttttgttaccattaattcca |
479 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37272982 |
ctcaacctgtgatgcagcttttgcagcacaacaaatagctgaaatagcagaaggatcatcagacaaccgtggtttagcacttttgttaccattaattcca |
37272883 |
T |
|
| Q |
480 |
gccattgcttgggttctgtacaacattcttcaaccagcacttaaccaaatcaaccgtatgcgtaacgataaaggagttatgattggtttaggtcttgggg |
579 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
37272882 |
gccatagcttgggttctgtacaacattcttcaaccagcacttaaccaaatcaaccgtatgcgtaacgataaaggagttataattggtttaggtcttgggg |
37272783 |
T |
|
| Q |
580 |
gtgggttagcagcttcagggtttgtatcaacacaagatgcaattgctagtgaaatggcccgcaattgctgaagctgctggtagtgataacaggggtcagc |
679 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||| |
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| T |
37272782 |
gtgggttagcagcttcagggtttgtatcaacacaagatgcaattgctagtgaaat-gactgcaattgctgaagctgctggtagtgataacaggggtcagc |
37272684 |
T |
|
| Q |
680 |
ttctgttgtttgttgtagcaccagctattctttgggttctttataatatttttgcagcctgctcttaaccaaaatcaacagaatgagacagtgaaac |
776 |
Q |
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||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
37272683 |
ttctgttgtttgtggtaacaccagctattctttgggttctttataata-ttttgcagcctgctcttaacc-aaatcaacagaatgagacagtgaaac |
37272589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 670 - 776
Target Start/End: Complemental strand, 37268655 - 37268551
Alignment:
| Q |
670 |
aggggtcagcttctgttgtttgttgtagcaccagctattctttgggttctttataatatttttgcagcctgctcttaaccaaaatcaacagaatgagaca |
769 |
Q |
| |
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|||| |||||||||||| ||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |
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| T |
37268655 |
agggctcagcttctgttatttgtggttgcaccagctattctttgggttctttataata-ttttgcagcctgctcttaacc-aaatcaacagaatgagacg |
37268558 |
T |
|
| Q |
770 |
gtgaaac |
776 |
Q |
| |
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||||||| |
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| T |
37268557 |
gtgaaac |
37268551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 186; Significance: 1e-100; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 403 - 636
Target Start/End: Complemental strand, 20581012 - 20580779
Alignment:
| Q |
403 |
cagcacaacaaatagctgaaatagcagaaggatcatcagacaaccgtggtttagcacttttgttaccattaattccagccattgcttgggttctgtacaa |
502 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||||||||||| |||| |||||||| ||| |
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| T |
20581012 |
cagcacaacagatagctgaaatagcagaaggatcatcagacaaccgcggttaagcacttctgttaccattaattccagccatagcttcggttctgttcaa |
20580913 |
T |
|
| Q |
503 |
cattcttcaaccagcacttaaccaaatcaaccgtatgcgtaacgataaaggagttatgattggtttaggtcttgggggtgggttagcagcttcagggttt |
602 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||| |
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| T |
20580912 |
cattcttcaaccagcacttaaccaaatcaaccgtatgcgtaacgataaaggagttatcattggtttgggtcttggtggtgggttagcagcttcagggttt |
20580813 |
T |
|
| Q |
603 |
gtatcaacacaagatgcaattgctagtgaaatgg |
636 |
Q |
| |
|
|| ||||||||||||||||| ||||||||||||| |
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| T |
20580812 |
gtgtcaacacaagatgcaatggctagtgaaatgg |
20580779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 186 - 374
Target Start/End: Complemental strand, 20581207 - 20581011
Alignment:
| Q |
186 |
tgaccatgatcaacgcaaagtccttgaaca---ctactagttcaccaaagttccacaacccaactaagctcatta---caaaccccacttccctcatttc |
279 |
Q |
| |
|
|||||||||| ||| |||||| |||||||| |||||| |||||||| ||| ||||||||| || ||||||| | || | ||||| ||| |||| |
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| T |
20581207 |
tgaccatgataaacacaaagtgcttgaacaacactactaactcaccaaaactccccaacccaacaaaactcattattgctaaactaacttcactcctttc |
20581108 |
T |
|
| Q |
280 |
tctcaagaaccttcttccaaagaaaattcccacaacagaaaatattaaactatcaacatccagaggagg--tagcactagcaggggcaatattctca |
374 |
Q |
| |
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|| ||||||||| |||||||||||||||||||||||||||| |||||||||||||| |||| || ||| | |||||||||| |||||||||||| |
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| T |
20581107 |
ccttaagaaccttattccaaagaaaattcccacaacagaaaacattaaactatcaacttccatagcagggacaacactagcaggagcaatattctca |
20581011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 652 - 767
Target Start/End: Complemental strand, 39017088 - 39016975
Alignment:
| Q |
652 |
gctgctggtagtgataacaggggtcagcttctgttgtttgttgtagcaccagctattctttgggttctttataatatttttgcagcctgctcttaaccaa |
751 |
Q |
| |
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|||||||| ||||| |||||||| ||||||||||||||||| ||||||||||| |||||||| || || |||| |||||||||||||||| |||| | |
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| T |
39017088 |
gctgctggaagtgacaacaggggaacacttctgttgtttgttgttgcaccagctatcctttgggtgctgtacaata-ttttgcagcctgctctcaacc-a |
39016991 |
T |
|
| Q |
752 |
aatcaacagaatgaga |
767 |
Q |
| |
|
|||||||| |||||| |
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|
| T |
39016990 |
gatcaacaggatgaga |
39016975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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