View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5790_high_11 (Length: 314)
Name: NF5790_high_11
Description: NF5790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5790_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 89 - 300
Target Start/End: Complemental strand, 18246509 - 18246298
Alignment:
| Q |
89 |
atgcatatggtatatgaaaaccttggatctctctctatcaacacaaactatgttgttgtttcaagtttagacaaagagagtaaaaatagctatgcctata |
188 |
Q |
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| T |
18246509 |
atgcatatggtatatgcagaccttggatctctctctatcaacacaaactatggtgttgtttcaagtttagacaaagagagtaaaaatagctatgccttta |
18246410 |
T |
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| Q |
189 |
agagctttgtgatggagaatagtagtgtctttccatttatgagtgagtgtctttccaaaagatatgaagaaaataacatggatgatgatatggaaggaaa |
288 |
Q |
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| T |
18246409 |
agagctttgtgatggagaatggtagtgtctttccatttatgagtgagtgtctttccaaaagatatgaagaacataacatggatgatgatatggaaggaaa |
18246310 |
T |
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| Q |
289 |
aggttcttattg |
300 |
Q |
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|||||||||||| |
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| T |
18246309 |
aggttcttattg |
18246298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 18246589 - 18246552
Alignment:
| Q |
6 |
agtgagatgaactcatgatctcttcacaagaaaaccaa |
43 |
Q |
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| T |
18246589 |
agtgaaatgaactcatgatctcttcacaagaaaaccaa |
18246552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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