View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5790_high_13 (Length: 275)
Name: NF5790_high_13
Description: NF5790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5790_high_13 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 19 - 275
Target Start/End: Original strand, 37273378 - 37273634
Alignment:
| Q |
19 |
gtatgagattttgacctcatatttttggtgcatttcttatcacttcacttacgtgtgcttcctaaaatgcattatgttatgttatttcattagttgctaa |
118 |
Q |
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| T |
37273378 |
gtatgagattttgacctcatatttttggtgcatttcttatcacttcacttacgtgtgcttcctaaaatgcattatgttatgttatttcattagttgctaa |
37273477 |
T |
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| Q |
119 |
tcaacctctccattagttccaaaatggatatcactcatttactataatttttcataatagtgtctaacaaatactccatcctttcaattcaacatcttta |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
37273478 |
tcaacctctccattagttccaaaatggatatcactcatttactataatttttcataatagtgtctaacaaatactccatcttttcaattcaacatcttta |
37273577 |
T |
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| Q |
219 |
aaaaatattataaatggattctaagaataattttatatcatctattcataactacat |
275 |
Q |
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|||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
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| T |
37273578 |
aaaaatattataaatggattttacgaataattttatatcatctattcataactacat |
37273634 |
T |
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