View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5790_high_4 (Length: 562)
Name: NF5790_high_4
Description: NF5790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5790_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 45044798 - 45044503
Alignment:
| Q |
1 |
actcaattttgcttgcttcatttctagtgactgtaatgtgttaatttaatggatgcttgtggttttcactttgcatgatcctattctgttcacacaaact |
100 |
Q |
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| T |
45044798 |
actcaattttgcttgcttcatttctagtgactgtaatgtgttaatttaatggatgcttgtgattttcactttgcatgatcctattctgttcacacaaact |
45044699 |
T |
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| Q |
101 |
cttataaattgtatgatctgtgtttaattacttaattttgttacctttatttattttcagttgcatgttatcatgctgctgattgtggtttcatttataa |
200 |
Q |
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| T |
45044698 |
cttataaattttatgatctgtgtttaattacttaattttgttacctt-atttattttcagttgcatgttatcatgctgctgattgtggtttcatttataa |
45044600 |
T |
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| Q |
201 |
ttaatttttggggtgatcaactttattactgtgattatatccaaatcacaatggtatcaaatttccggaaagccacccaacttatggatagtcttaa |
297 |
Q |
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| T |
45044599 |
ttaatttttggggtgatcaactttattactgtgattatatctaaatcacaatggtatcaaatttccggaaagccacccaacttatggatagtcttaa |
45044503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 400 - 547
Target Start/End: Complemental strand, 45044398 - 45044251
Alignment:
| Q |
400 |
taatcccttttgattctataataataatacctgacaaaaataaaataatcaaaacaattttgattgcttttcgtcgactcaatcaaaagttttttctttg |
499 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
45044398 |
taatcccttttgattctataataataatacctgacaaaaataaaataatcaaaacaaatttgattgcttttcgtcgactcaatcaaaagttttttctttg |
45044299 |
T |
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| Q |
500 |
aggttttaaggaatcaagagagtcggaggtaatgttttttatgtttat |
547 |
Q |
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| T |
45044298 |
aggttttaaggaatcaagagagtcggaggtaatgttttttatgtttat |
45044251 |
T |
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