View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5790_high_8 (Length: 431)
Name: NF5790_high_8
Description: NF5790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5790_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 133; Significance: 5e-69; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 238 - 418
Target Start/End: Original strand, 35402322 - 35402502
Alignment:
| Q |
238 |
aatcaatgttgaacaccaattgccaacttattgatttagtcgttctgaagttcttttgatatgcaatctaatgtctaatttgaagttcctttgtatagaa |
337 |
Q |
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| T |
35402322 |
aatcaatgttgaacaccaattgccaacttattggtttagtcgttctgaagttctttttatatgcaatctaatctctaatttgaagttcctttgtatagaa |
35402421 |
T |
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| Q |
338 |
gtattttgtttcggagattaacatgaatattttcatctcatatttccttattaaatcttgctcttcaattttgtagtacct |
418 |
Q |
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| T |
35402422 |
gaattctattcaggagattgacatgaatatttgcatctcatatttccttattcaatcttgttcttcaattttgtagtacct |
35402502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 31 - 69
Target Start/End: Complemental strand, 24481358 - 24481320
Alignment:
| Q |
31 |
cttcttgtgcacctttggctatgtttctttcatcattcc |
69 |
Q |
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| T |
24481358 |
cttcttgtgcacctttggttatgtttctttgatcattcc |
24481320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 114 - 258
Target Start/End: Original strand, 19411839 - 19411984
Alignment:
| Q |
114 |
atcttgagaatttcaatcttttgtatcccttgacttgcaattcttagttacctgatatgcaacctcgggtgcagttgattaccat-cctttctacaaaaa |
212 |
Q |
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| T |
19411839 |
atctttagaacttcaatcttttgaatcccttaacttgaaattctaatctacctgatctgtatcctcaagcacaattgatttccattcctttcatcaaaaa |
19411938 |
T |
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| Q |
213 |
ggttaattttgacttctaagatgacaatcaatgttgaacaccaatt |
258 |
Q |
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| T |
19411939 |
gcttgatcttgacttttgagatgagaatcaatgttgaacaccaatt |
19411984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 114 - 157
Target Start/End: Complemental strand, 27222854 - 27222811
Alignment:
| Q |
114 |
atcttgagaatttcaatcttttgtatcccttgacttgcaattct |
157 |
Q |
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| T |
27222854 |
atcttgagaatttcaatcctttgtatccattgactttcaattct |
27222811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 124 - 192
Target Start/End: Complemental strand, 21414487 - 21414419
Alignment:
| Q |
124 |
tttcaatcttttgtatcccttgacttgcaattcttagttacctgatatgcaacctcgggtgcagttgat |
192 |
Q |
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| T |
21414487 |
tttcaatctcatgtatcccttgaatggcaattctcatctacctgatatgcaacctcaagtacagttgat |
21414419 |
T |
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