View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5790_high_9 (Length: 366)
Name: NF5790_high_9
Description: NF5790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5790_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 15 - 355
Target Start/End: Complemental strand, 38955009 - 38954662
Alignment:
| Q |
15 |
aaattttccaccagaaccatattgaattgaaggcatacctaaagtgtaaatatagaaatcctggaatctgtcaagaacttgacatccaacacggatttga |
114 |
Q |
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| T |
38955009 |
aaattttccacccgaaccatattgaattgaaggcatacctaaagtgtaaatatagaaatcctggaatctgtcaagaacttgacatccaacacggatttga |
38954910 |
T |
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| Q |
115 |
cagtgattttacctgtacgcagatgatacaaccacaagcttcaaatccaccttccataattctaagcaacttattatacttagaatctaaggccaccacg |
214 |
Q |
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| T |
38954909 |
cagtgattttacctgtacgcagatgatacaaccacaagcttcaaatccaccttccataattctaagcaacttattatacttagaatctaaggccaccacg |
38954810 |
T |
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| Q |
215 |
tgaaaatttacacct-------gccaaaacttgtcatgaaaaattgaaaacaatcaacatggcattgtcctagagcctaacaggcaagccaaaattgtgg |
307 |
Q |
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| T |
38954809 |
tgaaaatttacacctttaccgagccaaaacttctcatgaaaaattgaaaacaatcaacatggcattgtcctagagcctaacaggcaagccaaaattgtgg |
38954710 |
T |
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| Q |
308 |
aatgtcctgatagttccatcactgccagctgctactattgttagaccc |
355 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
38954709 |
aatgtcttgatagttccatcactgccagctgctactattgttagaccc |
38954662 |
T |
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