View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5790_low_10 (Length: 347)
Name: NF5790_low_10
Description: NF5790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5790_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 17 - 317
Target Start/End: Complemental strand, 33093289 - 33092986
Alignment:
| Q |
17 |
cttggttccataaagttgctaacagagaaagaagacaaacttggtctctcatagattgcagaagcaataccagcatgagttagtaaaggacattctaaca |
116 |
Q |
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| T |
33093289 |
cttggttccataaagttgccaacagagaaagaagacaaacttggtctctcatagattgcagaagcaataccagcatgagttagtaaaggacattctaaca |
33093190 |
T |
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| Q |
117 |
taaccacctcatctagaagcttacagttgctgcacaattnnnnnnnnnnnnnnn---tgaatcgttaacatagaaattacctgagagattaaccttgcgg |
213 |
Q |
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| T |
33093189 |
taaccacctcatctagaagcttacagttgcttcacaattcaaaaaaaaaaaaaaaaatgaatcgttaacatagaaattacctgagagattaaccttgcgg |
33093090 |
T |
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| Q |
214 |
agttttaaaagcttttgagcaagaacctttaaagcattgttgcaactgtcatagtcgtcgctggttattcttcctttggggaaactgatatcaaaatctt |
313 |
Q |
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| T |
33093089 |
agttttaaaagcttttgagcaagaacctttaaagcattgttgcaactgtcgtagtcgtcgctggttattcttcctttggggaaactgatatcaaaatctt |
33092990 |
T |
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| Q |
314 |
cgag |
317 |
Q |
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|||| |
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| T |
33092989 |
cgag |
33092986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 178 - 251
Target Start/End: Original strand, 33397395 - 33397468
Alignment:
| Q |
178 |
ttaacatagaaattacctgagagattaaccttgcggagttttaaaagcttttgagcaagaacctttaaagcatt |
251 |
Q |
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| T |
33397395 |
ttaacgtagaaatgaccagagagattaaccttgcggagttttgaaagcttttgagtgagaagcttcaaagcatt |
33397468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 198 - 255
Target Start/End: Complemental strand, 37580008 - 37579951
Alignment:
| Q |
198 |
gagattaaccttgcggagttttaaaagcttttgagcaagaacctttaaagcattgttg |
255 |
Q |
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| T |
37580008 |
gagattaaccttgcagagttttgaaagcttttgagtaagaacctttagagcattgttg |
37579951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 71 - 152
Target Start/End: Complemental strand, 36810323 - 36810242
Alignment:
| Q |
71 |
attgcagaagcaataccagcatgagttagtaaaggacattctaacataaccacctcatctagaagcttacagttgctgcaca |
152 |
Q |
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| T |
36810323 |
attgcagtagcaataccagcacgtgttaggaaagggcaatcgaacataaccacctcttctaaaagctcacagttcctgcaca |
36810242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 184 - 251
Target Start/End: Original strand, 36876478 - 36876545
Alignment:
| Q |
184 |
tagaaattacctgagagattaaccttgcggagttttaaaagcttttgagcaagaacctttaaagcatt |
251 |
Q |
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| T |
36876478 |
tagaaattaccagagaaattaaccttgcgaagttttgaaagcctttgagtaagaagctttagagcatt |
36876545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 196 - 253
Target Start/End: Complemental strand, 27004951 - 27004894
Alignment:
| Q |
196 |
gagagattaaccttgcggagttttaaaagcttttgagcaagaacctttaaagcattgt |
253 |
Q |
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| T |
27004951 |
gagagattaacattgcggagttttgaaagcttttgagtaagaagctgtagagcattgt |
27004894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 99
Target Start/End: Complemental strand, 27005107 - 27005043
Alignment:
| Q |
35 |
ctaacagagaaagaagacaaacttggtctctcatagattgcagaagcaataccagcatgagttag |
99 |
Q |
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| T |
27005107 |
ctaacagagaaagaattcaaagtgggtctctggtagattgcagaagcaataccatcatgtgttag |
27005043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 98
Target Start/End: Complemental strand, 33714237 - 33714161
Alignment:
| Q |
22 |
ttccataaagttgctaacagagaaagaagacaaacttggtctctcatagattgcagaagcaataccagcatgagtta |
98 |
Q |
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|||| |||||||| ||| ||| |||||| ||| | ||||||| |||||||||||||||||||||||||| |||| |
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| T |
33714237 |
ttccttaaagttggtaagagataaagaacttaaagtcggtctctggtagattgcagaagcaataccagcatgtgtta |
33714161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 245
Target Start/End: Complemental strand, 18723617 - 18723543
Alignment:
| Q |
171 |
tgaatcgttaacatagaaattacctgagagattaaccttgcggagttttaaaagcttttgagcaagaacctttaa |
245 |
Q |
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|||||| |||| |||| |||||| || |||||||| |||||||||||| ||||| |||||| |||||||||||| |
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| T |
18723617 |
tgaatcattaatgtagatattaccagaaagattaactttgcggagttttgaaagcctttgagtaagaacctttaa |
18723543 |
T |
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