View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5790_low_11 (Length: 340)
Name: NF5790_low_11
Description: NF5790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5790_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 19 - 279
Target Start/End: Complemental strand, 29005949 - 29005689
Alignment:
| Q |
19 |
tgtatcttttctaatttggtgcttcatggaagacatgggcacatggtgattttcttagtagcagagacaaaagtagcaagattaggttaaaatagaaatg |
118 |
Q |
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| T |
29005949 |
tgtatcttttctaatttggtgcttcatggaagacataggcacatggtgattttcttagtagcagagacaaaagtagcaatattaggttaaaatagaaatg |
29005850 |
T |
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| Q |
119 |
gtaggccaatattcaaaatagaagtccagaactaaacttttcaaattgaaattaaaggcattttgcaggcaagagatggaggagggtccatgtatgtggc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
29005849 |
gtaggccaatattcaaaatagaagtccagaactaaacttttcaaattgaaattaaaggcattttgcaggcaagatatggaggagggtccatgtatgtggc |
29005750 |
T |
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| Q |
219 |
ttcttataaattaaaaactttaacaagctggttctacaaaagttccagcccaggcaacata |
279 |
Q |
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||||||||||| |||| ||||||||||||||||| |||||||||||||||||| ||||||| |
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| T |
29005749 |
ttcttataaatgaaaatctttaacaagctggttccacaaaagttccagcccagccaacata |
29005689 |
T |
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