View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5790_low_13 (Length: 314)
Name: NF5790_low_13
Description: NF5790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5790_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 16 - 303
Target Start/End: Original strand, 20602510 - 20602798
Alignment:
| Q |
16 |
atatcaacacctcagtttgttctcaatttcactcttaaaccctacaacccttttcaccaattcaatcttcttcttttggaatcgatttattcttcattga |
115 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
20602510 |
atatcaacacctcagtttgttctcaatttcattcttaaaccctacaacccttttcattgattcaatcttcttcttttggaatcgatttattcttcattga |
20602609 |
T |
|
| Q |
116 |
ttctaagtttctctccctctttaactcttgagatgtttcaatttctcttttcccaaaattgttcatctattcc-tttcaccttcaaatccaccaccctaa |
214 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |||| ||||||||| |
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| T |
20602610 |
ttctaagtttctctccctctctaactcttgagatgtttcaatttctcttttcccaaaattgttcatatattccttttcaccttcagatccgccaccctaa |
20602709 |
T |
|
| Q |
215 |
cctcccatcactatcaaccttt-tttcagctgccgtcaacctcgctgccatctctcccttattgatttctaaggttcgacatctcttcat |
303 |
Q |
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|||||| |||| |||||||||| ||||| ||||||||| |||||||||||||||||| ||||||| ||||| |||||||||||||||||| |
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| T |
20602710 |
cctcccgtcaccatcaacctttctttca-ctgccgtcagcctcgctgccatctctcctttattgacttctagggttcgacatctcttcat |
20602798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 16 - 303
Target Start/End: Complemental strand, 8507001 - 8506717
Alignment:
| Q |
16 |
atatcaacacctcagtttgttctcaatttcactcttaaaccctacaacccttttcaccaattcaatcttcttcttttggaatcgatttattcttcattga |
115 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |
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| T |
8507001 |
atatcaacacctcagtttgttctcaatttcattcttaaaccctacaacccttttcattgattcaatcttcttcttttggaatcgatgtattcttcattga |
8506902 |
T |
|
| Q |
116 |
ttctaagtttctctccctctttaactcttgagatgtttcaatttctcttttcccaaaattgttcatctattcctttcaccttcaaatccaccaccctaac |
215 |
Q |
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|
|||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||| |
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| T |
8506901 |
ttctaagtttctctccctctctaa---ttgagatgtttcaatttctcttttcccaaaattgttcatatattcctttcaccttcagatccgccaccctaac |
8506805 |
T |
|
| Q |
216 |
ctcccatcactatcaaccttttttcagctgccgtcaacctcgctgccatctctcccttattgatttctaaggttcgacatctcttcat |
303 |
Q |
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||||| |||| |||||||||| ||| |||||||||| |||||||||||||||||| |||||| ||||| |||||||||||||||||| |
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| T |
8506804 |
ctcccgtcaccatcaacctttcttccgctgccgtcagcctcgctgccatctctcctatattgacttctagggttcgacatctcttcat |
8506717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 19 - 200
Target Start/End: Original strand, 51647181 - 51647362
Alignment:
| Q |
19 |
tcaacacctcagtttgttctcaatttcactcttaaaccctacaacccttttcaccaattcaatcttcttcttttggaatcgatttattcttcattgattc |
118 |
Q |
| |
|
||||||||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
51647181 |
tcaacacctcagtttcttctcaatttcattcttaaaccctacaacccttttcattaattcaatcttcttcttttggaatcaatttattcttcattgattc |
51647280 |
T |
|
| Q |
119 |
taagtttctctccctctttaactcttgagatgtttcaatttctcttttcccaaaattgttcatctattcctttcaccttcaa |
200 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |
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| T |
51647281 |
taagtttctctccctctctaactcttgagatgtttcaatttctcttttcccaaaattgttcatatattcctttcaccatcaa |
51647362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 34 - 303
Target Start/End: Complemental strand, 32015505 - 32015233
Alignment:
| Q |
34 |
gttctcaatttcactcttaaaccctacaacccttttcaccaattcaatcttcttcttttggaatcgatttattcttcattgattctaagtttctctccct |
133 |
Q |
| |
|
||||||||||||||||| |||| ||| |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
32015505 |
gttctcaatttcactctcaaactctataacccttttcactaattcaatattcttcttttggaatcgatttattcttcattgattctcagtttctctccct |
32015406 |
T |
|
| Q |
134 |
ctttaactcttgagatgtttcaatttctcttttcccaaaattgttcatctattcctttcaccttcaaatccaccaccct---aacctcccatcactatca |
230 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||| | | | |||||||| |||||||| |
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| T |
32015405 |
ctctaactcttgagatgtttcaatttctcttttcccaaaattgttcacgtattcccttcaccttcttctcccaaaacgtttcaacctcccgccactatca |
32015306 |
T |
|
| Q |
231 |
accttttttcagctgccgtcaacctcgctgccatctctcccttattgatttctaaggttcgacatctcttcat |
303 |
Q |
| |
|
|||||| ||| || || |||||||||| ||| ||||||||||||||| || || |||||||||||||||||| |
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| T |
32015305 |
acctttcttccgccgctgtcaacctcgttgctgtctctcccttattgacttttagggttcgacatctcttcat |
32015233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 222 - 303
Target Start/End: Original strand, 51647353 - 51647434
Alignment:
| Q |
222 |
tcactatcaaccttttttcagctgccgtcaacctcgctgccatctctcccttattgatttctaaggttcgacatctcttcat |
303 |
Q |
| |
|
|||| |||||||||| ||| |||| ||||| |||||||||||||||||| ||||||| ||||| |||||||||||||||||| |
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| T |
51647353 |
tcaccatcaacctttcttccgctgtcgtcagcctcgctgccatctctcctttattgacttctagggttcgacatctcttcat |
51647434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 29 - 198
Target Start/End: Original strand, 23738985 - 23739157
Alignment:
| Q |
29 |
agtttgttctcaatttcactcttaaaccctacaaccctt-ttcaccaattcaatcttcttcttttggaatcgatttattcttcattgattctaagtttct |
127 |
Q |
| |
|
|||||||||||||||| ||||| ||||| || ||||||| ||||| ||| |||||||||||||||||||| |||||||||||||||||||| | ||||| |
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| T |
23738985 |
agtttgttctcaattttactctcaaaccatataacccttcttcactgattaaatcttcttcttttggaatc-atttattcttcattgattctcaatttct |
23739083 |
T |
|
| Q |
128 |
ctccctctttaactcttgagatgtttcaatttct---cttttcccaaaattgttcatctattcctttcaccttc |
198 |
Q |
| |
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|||| | ||| ||||||||||||||||||| |||| || ||||| |||||||||||||||||| |||| |
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| T |
23739084 |
ttcccattccaacgtttgagatgtttcaatttcttctctttaccaaaaatggttcatctattcctttcatcttc |
23739157 |
T |
|
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