View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5790_low_14 (Length: 304)
Name: NF5790_low_14
Description: NF5790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5790_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 18 - 288
Target Start/End: Original strand, 34629652 - 34629922
Alignment:
| Q |
18 |
aaactaataaattgccaaattattacacactcaataaaaactaataattgtcacaaataataaattaaaacaaacctgaaattccaaatgtgaatgcaaa |
117 |
Q |
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|||| |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
34629652 |
aaacaaataaattgccaaattattacacattcaataaaaactaataattgtcacagataataaattaaaactaacctgaaattccaaatgtgaatgcaaa |
34629751 |
T |
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| Q |
118 |
gattcacaaaagtggtattttgttgtgtataatttttggtacgttacaaggatccaccaatccaaggaaaggaacataaaacacacgtgatgttagatca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34629752 |
gattcacaaaagtggtattttgttgtgtataatttttggtacgttacaaggatccaccaatccaaggaaaggaacataaaacacacgtgatgttagatca |
34629851 |
T |
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| Q |
218 |
atgaaagaaagacaacgtgtgacaatgnnnnnnnngacaaaaatgtgtgacaatgttgttgattatgagat |
288 |
Q |
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||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |
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| T |
34629852 |
atgaaagaaagacaacgtgtgacaatgttttttttgacaaaaatgtatgacaatgttgttgattatgagat |
34629922 |
T |
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