View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5790_low_17 (Length: 256)

Name: NF5790_low_17
Description: NF5790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5790_low_17
NF5790_low_17
[»] chr8 (2 HSPs)
chr8 (18-256)||(12521237-12521475)
chr8 (82-220)||(33168316-33168458)
[»] chr1 (2 HSPs)
chr1 (88-155)||(37627429-37627496)
chr1 (162-207)||(15918098-15918142)
[»] chr3 (1 HSPs)
chr3 (74-196)||(12881039-12881168)
[»] chr7 (1 HSPs)
chr7 (74-220)||(10234631-10234784)
[»] chr6 (2 HSPs)
chr6 (49-237)||(31974190-31974383)
chr6 (92-155)||(28973924-28973987)
[»] chr2 (2 HSPs)
chr2 (49-89)||(41700295-41700335)
chr2 (169-209)||(31603483-31603523)
[»] chr4 (1 HSPs)
chr4 (86-151)||(31371767-31371833)
[»] chr5 (1 HSPs)
chr5 (162-222)||(12685705-12685764)


Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 256
Target Start/End: Original strand, 12521237 - 12521475
Alignment:
Q  18 ctttacattaccagcaatttttatttcaaactctttatcgctttgttttggttccttcatttacttttatgtcatttactttcatgtctttatcttataa 117  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12521237 ctttacatttccagcaatttttatttcaaactctttatcgctttgttttcgttccttcatttacttttatgtcatttactttcatgtctttatcttataa 12521336  T
Q  118 tcctttgtatattatgatcatgtgtgagtggacttttcctagtgttgttggaataatttaatgatggaatcctaatcaatctcaagtctaaaatctattt 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||||||||    
T  12521337 tcctttgtatattatgatcatgtgtgagtggacttttcctagtgttgttggaataatttaatgatggagtcctaatcaatcccaagtctagaatctattt 12521436  T
Q  218 tatttgagttcctattctaacataaccttgttattattc 256  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  12521437 tatttgagtttctattctaacataaccttgttattattc 12521475  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 82 - 220
Target Start/End: Complemental strand, 33168458 - 33168316
Alignment:
Q  82 ttttatgtcatttactttcatgtctttatcttataatcctttgtatattatgatcatgtgtgagtggacttttc----ctagtg-ttgttggaataattt 176  Q
    ||||||||| |||||||||| |||||||| || |||||  |||| || |||||||||  ||||||  |||||||    || ||| ||||||||||||| |    
T  33168458 ttttatgtcttttactttcaagtctttatattttaatctcttgtctactatgatcattagtgagtaaacttttctagtctcgtgattgttggaataatct 33168359  T
Q  177 aatgatggaatcctaatcaatctcaagtctaaaatctattttat 220  Q
    |||||| ||||| ||||||| || ||||||||||||||||||||    
T  33168358 aatgattgaatcataatcaacct-aagtctaaaatctattttat 33168316  T

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Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 88 - 155
Target Start/End: Original strand, 37627429 - 37627496
Alignment:
Q  88 gtcatttactttcatgtctttatcttataatcctttgtatattatgatcatgtgtgagtggacttttc 155  Q
    |||||||||||||||||||||||||| |||||  |||| || ||||||||||||||||| ||| ||||    
T  37627429 gtcatttactttcatgtctttatcttttaatctcttgtctactatgatcatgtgtgagtagacatttc 37627496  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 162 - 207
Target Start/End: Original strand, 15918098 - 15918142
Alignment:
Q  162 ttgttggaataatttaatgatggaatcctaatcaatctcaagtcta 207  Q
    ||||||||||||| ||||||| ||||||||||||| ||||||||||    
T  15918098 ttgttggaataatctaatgattgaatcctaatcaa-ctcaagtcta 15918142  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 74 - 196
Target Start/End: Original strand, 12881039 - 12881168
Alignment:
Q  74 tcatttacttttatgtcatttactttcatgtctt--tatcttataatcctttgtatattatgatcatgtgtgagtggacttttccta-----gtgttgtt 166  Q
    ||||||||||||||| | ||||||||||||||||  ||| || |||||| |||| || |||||||||| |||||| |||||||| ||     |  ||||     
T  12881039 tcatttacttttatgccttttactttcatgtctttatatattttaatcccttgtctactatgatcatgggtgagtagacttttcttatcttgggattgta 12881138  T
Q  167 ggaataatttaatgatggaatcctaatcaa 196  Q
    |||||||||||||||| ||||| |||||||    
T  12881139 ggaataatttaatgattgaatcttaatcaa 12881168  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 74 - 220
Target Start/End: Original strand, 10234631 - 10234784
Alignment:
Q  74 tcatttacttttatgtcatttactttcatgtctttatcttataatcctttgtata--ttatgatcatgtgtgagtggactttt----cctagtg-ttgtt 166  Q
    ||||||||||||||||||||||||||||||  ||||| || |||||| |||| ||   ||| ||||||| ||||| ||| |||     || ||| |||||    
T  10234631 tcatttacttttatgtcatttactttcatgcatttattttctaatcccttgtctactctataatcatgtatgagtagacctttttagtcttgtgattgtt 10234730  T
Q  167 ggaataatttaatgatggaatcctaatcaatctcaagtctaaaatctattttat 220  Q
    | |||||| ||||||| |||||||||| || | |||||||||| ||||||||||    
T  10234731 gaaataatctaatgattgaatcctaatgaaacccaagtctaaactctattttat 10234784  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 49 - 237
Target Start/End: Complemental strand, 31974383 - 31974190
Alignment:
Q  49 tctttatcgctttgttttggttccttcatttacttttatgtcatttactttcatgtctttatcttataatcctttgtatattatgatcatgtgtgagtgg 148  Q
    ||||||||||||||||||  |||  |||||||||||||| ||||||||||| ||||||| ||||| |  | | |  | || ||||||||||| ||||| |    
T  31974383 tctttatcgctttgttttcattctgtcatttacttttatatcatttacttttatgtcttcatcttctgttacctcatctactatgatcatgtatgagtag 31974284  T
Q  149 acttt-----tcctagtgttgttggaataatttaatgatggaatcctaatcaatctcaagtctaaaatctattttatttgagttcctattctaa 237  Q
    |||||     |||| |  |||| ||||| || ||||||||||  | ||| |||||||||||||| | ||| |||||||  | ||||||||||||    
T  31974283 acttttctagtcctgggattgtgggaattatctaatgatggacccttaaacaatctcaagtctagactctcttttattatatttcctattctaa 31974190  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 92 - 155
Target Start/End: Original strand, 28973924 - 28973987
Alignment:
Q  92 tttactttcatgtctttatcttataatcctttgtatattatgatcatgtgtgagtggacttttc 155  Q
    ||||||||||||||||||| || |||||| || | || |||||| |||||||| ||||||||||    
T  28973924 tttactttcatgtctttatattttaatcccttttctactatgattatgtgtgaatggacttttc 28973987  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 89
Target Start/End: Complemental strand, 41700335 - 41700295
Alignment:
Q  49 tctttatcgctttgttttggttccttcatttacttttatgt 89  Q
    ||||||||||||||||||  |||||||||||||||||||||    
T  41700335 tctttatcgctttgttttcattccttcatttacttttatgt 41700295  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 209
Target Start/End: Complemental strand, 31603523 - 31603483
Alignment:
Q  169 aataatttaatgatggaatcctaatcaatctcaagtctaaa 209  Q
    |||||| ||||||||||||||||||||| | ||||||||||    
T  31603523 aataatctaatgatggaatcctaatcaaacccaagtctaaa 31603483  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 151
Target Start/End: Complemental strand, 31371833 - 31371767
Alignment:
Q  86 atgtcatttactttcatgtctttat-cttataatcctttgtatattatgatcatgtgtgagtggact 151  Q
    ||||| |||||||||||||||||||  ||||||||| ||||  | ||||||||||||||||| ||||    
T  31371833 atgtcttttactttcatgtctttatatttataatccattgtcaactatgatcatgtgtgagtagact 31371767  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 222
Target Start/End: Complemental strand, 12685764 - 12685705
Alignment:
Q  162 ttgttggaataatttaatgatggaatcctaatcaatctcaagtctaaaatctattttattt 222  Q
    |||||||| |||| ||||||| ||||| || |||| | |||||||||||||||||||||||    
T  12685764 ttgttggactaatctaatgattgaatcatattcaacc-caagtctaaaatctattttattt 12685705  T

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