View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5790_low_2 (Length: 575)
Name: NF5790_low_2
Description: NF5790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5790_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 493; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 18 - 526
Target Start/End: Original strand, 52914294 - 52914802
Alignment:
| Q |
18 |
atgtaccattcaactgctgttttgctacgagacggtagggttcttgttgccggtagcaaccctcatgtaaattacaattttactcgtttgtttccaactg |
117 |
Q |
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| T |
52914294 |
atgtaccattcaactgctgttttgctacgagacggtagggttcttgttgccggtagcaaccctcatgtaaattacaattttactcgtttgtttccaactg |
52914393 |
T |
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| Q |
118 |
aacttcggttagaagctttttcaccttcgtatttagagttaggattcaatgatgtgcgtcctataatggtgtttcctgcaccccaatcacaaacgaaatt |
217 |
Q |
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| T |
52914394 |
aacttcggttagaagcgttttcaccttcgtatttagagttgggattcaatgatgtgcgtcctataatggtgtttcctgcaccccaatcacaaacgaaatt |
52914493 |
T |
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| Q |
218 |
gaaatacgctcaaaaattgaaggttcggtttcaggtgaaggcaacattgatgaaaaacatggtgtcagtgacaatgtatgcaccgtcttttaacacgcat |
317 |
Q |
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| T |
52914494 |
gaaatacgctcaaaaattgaaggttcggtttcaagtgaaggcaacattgatgaaaaacatggtgtcagtgacaatgtatgcaccgtcttttaacacgcat |
52914593 |
T |
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| Q |
318 |
tctttctcaatgaatcaaaggttgttggtgcttgatgaattgagtagtagtaaaaatgttgttggagaatcgacatcaacataccaagttgaagtggcaa |
417 |
Q |
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| T |
52914594 |
tctttctcaatgaatcaaaggttgttggtgcttgatgaattgagtagtagtaaaaatgttgttggagaatcgacatcaacataccaagttgaagtggcaa |
52914693 |
T |
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| Q |
418 |
taccaaattcacccattcttgcacctccgggatattatttactatttgtggtccatcaagaagttccaagtcagggtgtttgggtccaactactttaatt |
517 |
Q |
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| T |
52914694 |
taccaaattcacccattcttgcacctccgggatattatttactatttgtggtccatcaagaagttccaagtcagggtgtttgggtccaactactctaatt |
52914793 |
T |
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| Q |
518 |
ttcaactac |
526 |
Q |
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| T |
52914794 |
ttcaactac |
52914802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 425 - 522
Target Start/End: Original strand, 7571549 - 7571646
Alignment:
| Q |
425 |
ttcacccattcttgcacctccgggatattatttactatttgtggtccatcaagaagttccaagtcagggtgtttgggtccaactactttaattttcaa |
522 |
Q |
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|||||| |||||||| ||||| |||| |||| ||||||||||||| ||| ||||| |||| ||| | || ||||| | ||| ||||||||||||||| |
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| T |
7571549 |
ttcacctattcttgcgcctcctggattttatctactatttgtggttcataaagaaattcctagtgaaggaatttggatacaaatactttaattttcaa |
7571646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 304 - 347
Target Start/End: Original strand, 531611 - 531654
Alignment:
| Q |
304 |
cttttaacacgcattctttctcaatgaatcaaaggttgttggtg |
347 |
Q |
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| T |
531611 |
cttttaatacacattcattctcaatgaatcaaaggttgttggtg |
531654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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