View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5790_low_3 (Length: 566)
Name: NF5790_low_3
Description: NF5790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5790_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 259 - 546
Target Start/End: Complemental strand, 35045872 - 35045595
Alignment:
| Q |
259 |
aaattactcaataaa-catcatgtattgtgtaagcttcttgtggtccttaaccgctacatgctctttttattttgttttccaagtttgaagaaatagcat |
357 |
Q |
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| T |
35045872 |
aaattactcaataaaacatcatgtattgtgtaagcttcttgtggtccttaaccgctacatgctctttttattttgttttccgagtttgaagaaatagca- |
35045774 |
T |
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| Q |
358 |
ttgaaatagcaaatattatcgtacccttgatggcgacaaagcttattggtttttcatgacaatatgcatgcatannnnnnnn-ctttcttagtagacaat |
456 |
Q |
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| T |
35045773 |
-----------aatattatcgtacccttgatggcgacaaagcttattggtttttcatgacaatatgcatgcatatttttttttctttcttagtagacaat |
35045685 |
T |
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| Q |
457 |
ccactatacattgcacccttcaaaaataaatccactacacattgtacggttatatatatacgggggttggctttcgtcttgtactattca |
546 |
Q |
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| T |
35045684 |
ccactatacattgcacccttcaaaaataaatccactacacattgtacggttatatatatacgggggttggctttcgtctcatactattca |
35045595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 111 - 273
Target Start/End: Complemental strand, 35046056 - 35045894
Alignment:
| Q |
111 |
gactagccaccattaacccataaacattccaatggttgatcacactaccgatgtaaatattatacttaattaaacccacttatttaagggagcaccataa |
210 |
Q |
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| T |
35046056 |
gactagccaccattaacccataaacattccaatggttgatctcactaccgatgtaaatattatacttaattaaacccacttatttcagggagcaccataa |
35045957 |
T |
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| Q |
211 |
tataattttttacttaaataaaactagttctcaatttgttagtaaattaaattactcaataaa |
273 |
Q |
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| T |
35045956 |
tataatttgttacttaaataaaactagttctcaatttgttagtaaattaaattactcaataaa |
35045894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 2 - 87
Target Start/End: Complemental strand, 35046175 - 35046078
Alignment:
| Q |
2 |
ggatgtcgaagaatatataaatgagttgttttggtttacaaaccttttt------------atatattcacaacctattcaaagtacatgtaggatcg |
87 |
Q |
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| T |
35046175 |
ggatgttgaaaaatatataaatgagttgttttggtttacaaacctttttatacggttaacaatatattcacaatctattcaaagtacatgtaggatcg |
35046078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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