View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5790_low_5 (Length: 561)
Name: NF5790_low_5
Description: NF5790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5790_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 512; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 1 - 549
Target Start/End: Original strand, 146723 - 147273
Alignment:
| Q |
1 |
aacggacttcaaaatagtcaatttattaaataaaacaccatctcttaccaaaattctcttctccaaaagtccgctttctcaacctcaacaatgatattta |
100 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
146723 |
aacggacttcaaaatggtcaatttattaaataaaacaccatctcttaccaaaattctcttctccaaaagtccgctttctcaacctcaacaatgatattta |
146822 |
T |
|
| Q |
101 |
aacacccaaaaaatctcacacacacattcaaaatcttatt--atctttatctttctcatactatcacataacaaacatatctatcatgcatccatccatc |
198 |
Q |
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|||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
146823 |
aacacctaaaaaatctcacacacacattcaaaatcttattttatctttatctttctcatactatcacataacaaacatatctatcatgcatccatccatc |
146922 |
T |
|
| Q |
199 |
ctactcccaaccttcaagaccatactatcctgcatgaggtaaatttaaagagctagtggaatactatccttagaaatagatcgataaactccctcctttt |
298 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |
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| T |
146923 |
ctactcccaaccttcaagaccatactatccttcatgaggtaaatttaaagagctagtggaatactatccttagaaatagatcgataaacacccacctttt |
147022 |
T |
|
| Q |
299 |
tggatgccccctctatgttcggcttgaggttgtctcttactatttaatatagtacactctagggtaatgcaatgatacgtgaatgatatagatgacaggt |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
147023 |
tggatgccccctctatgttcggcttgaggttgtctcttactatttaatatagtacattctagggtaatgcaatgatacatgaatgatatagatgacaggt |
147122 |
T |
|
| Q |
399 |
ttatatcctattattcttacctgagaaagataaaccatttgtttaatttcatcaatacttaatcgtttttgcgagggtggtcttgctttcatgatctctt |
498 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
147123 |
ttatatcctattattcttacctgagaaagataaaccatttgtttaatttcatcaatacttaatcgtttttgcgagggtggtcttgctttcatgatctctt |
147222 |
T |
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| Q |
499 |
cttgctcttcctacaagataaagacaaagaatgattgattaccatgttcct |
549 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
147223 |
cttgctcttcctacaagataaagacaaagaatgattgattaccatgttcct |
147273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 415 - 539
Target Start/End: Original strand, 127014 - 127138
Alignment:
| Q |
415 |
ttacctgagaaagataaaccatttgtttaatttcatcaatacttaatcgtttttgcgagggtggtcttgctttcatgatctcttcttgctcttcctacaa |
514 |
Q |
| |
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|||||||||||||||||| ||||| |||||||| |||||||||||||||||||| |||| || ||||||||||| || ||||||||||||||||||| |
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| T |
127014 |
ttacctgagaaagataaatcattttcttaatttcctcaatacttaatcgtttttgggaggttgatcttgctttcaaaattccttcttgctcttcctacaa |
127113 |
T |
|
| Q |
515 |
gataaagacaaagaatgattgatta |
539 |
Q |
| |
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||||||| ||||||||||| |||| |
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| T |
127114 |
aataaagataaagaatgatttatta |
127138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 85; Significance: 3e-40; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 399 - 543
Target Start/End: Original strand, 3958596 - 3958740
Alignment:
| Q |
399 |
ttatatcctattattcttacctgagaaagataaaccatttgtttaatttcatcaatacttaatcgtttttgcgagggtggtcttgctttcatgatctctt |
498 |
Q |
| |
|
|||||||||| |||| ||||||||||||||||| ||||| | |||||| |||||||||||||||||||| ||||||||||||||||||| ||| |||| |
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| T |
3958596 |
ttatatcctactatttttacctgagaaagataagtcattttctgaatttcctcaatacttaatcgtttttgtgagggtggtcttgctttcaagatttctt |
3958695 |
T |
|
| Q |
499 |
cttgctcttcctacaagataaagacaaagaatgattgattaccat |
543 |
Q |
| |
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|||||||||||||||||||||||| ||||||| |||| |||||| |
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|
| T |
3958696 |
cttgctcttcctacaagataaagaaaaagaatatttgactaccat |
3958740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 415 - 519
Target Start/End: Original strand, 11803663 - 11803767
Alignment:
| Q |
415 |
ttacctgagaaagataaaccatttgtttaatttcatcaatacttaatcgtttttgcgagggtggtcttgctttcatgatctcttcttgctcttcctacaa |
514 |
Q |
| |
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||||||||||||||||||||||||| ||||| || | | ||||||| |||| || | || ||||| || || ||||| || ||||| ||||||||||| |
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| T |
11803663 |
ttacctgagaaagataaaccatttgcttaatctccttataacttaattgtttctgtgtggacggtctagcctttatgatttcctcttgttcttcctacaa |
11803762 |
T |
|
| Q |
515 |
gataa |
519 |
Q |
| |
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|||| |
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|
| T |
11803763 |
aataa |
11803767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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