View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5790_low_7 (Length: 445)
Name: NF5790_low_7
Description: NF5790
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5790_low_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 16 - 363
Target Start/End: Complemental strand, 45682231 - 45681878
Alignment:
| Q |
16 |
ataagcttaattaaaggtatgtcctacaaa-gattaatatcacataatcccatggacaataatgccacacatttctttccttatgtaagtcatcttggct |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45682231 |
ataagcttaattaaaggtatgtcctacaaaagattaatatcacataatcccatggacaataatgccacacatttctttccttatgtaagtcatcttggct |
45682132 |
T |
|
| Q |
115 |
gcagaatataaatgggggaccaggggccacaattactaaaatttcnnnnnnnnnnnnnnnnnnnnnnnntatataaacaatcccagctcagcattgataa |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
45682131 |
gcagaatataaatgggggaccaggggccacaattactaaaatttccacatacacaaaaacacacacacatatataaacaatcccagctcagcattgataa |
45682032 |
T |
|
| Q |
215 |
gacaaattaattataatatactgtacagcatattatacaagtgattttggattagatttgtctcaactattgtctgtctt-----gattattaggacggt |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
45682031 |
gacaaattaattataatatactgtacagcatattgtacaagtgattttggattagatttgtctcaactattgtctgtcttgatttgattattaggacggt |
45681932 |
T |
|
| Q |
310 |
tcaatttgagaacttgacatacctattgactcctaccttcaatgactaaggttc |
363 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45681931 |
tcaatttgagaacttgacatacctattgactcctaccttcaatgactaaggttc |
45681878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 387 - 427
Target Start/End: Complemental strand, 45681824 - 45681784
Alignment:
| Q |
387 |
cagtccttcccatacatgcatgtttcttgtacaacattttt |
427 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45681824 |
cagtccttcccatacatgcatgtttcttgtacaacattttt |
45681784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University