View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5791_high_1 (Length: 361)
Name: NF5791_high_1
Description: NF5791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5791_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 13898701 - 13898356
Alignment:
| Q |
1 |
taaatcatgcatgtgaggccactaattaggtatataagatagatatagataattggccttaaaatatgtctaagcactgtcggggatagatgacagtgaa |
100 |
Q |
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| T |
13898701 |
taaatcatgcatgtgaggccactaattaggtatataagatagatatagataattggccttaaaatatgtctaagcactgtcggggatagatgacagtgaa |
13898602 |
T |
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| Q |
101 |
tgtcgtccttgtttgtcttgctcattttctcactttcttttgtgaatttggctaatattctacaatatgcatgctcattaaaagcatcaaaatctcttta |
200 |
Q |
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| T |
13898601 |
tgtcgtccttgtttgtcttgctcattttctcactttcttttgtgaatttggctaatattctacaatatgcatgctcattaaaagcatcaaaatctcttta |
13898502 |
T |
|
| Q |
201 |
tgagtcaaactctaccacatccactacactatgagatacgaaataatgcaaagcacaattgattaatcccatttgtatagcttctttannnnnnncaatt |
300 |
Q |
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| T |
13898501 |
tgagtcaaactctaccgcatccactacactatgagatacgaaataatgcaaagcacaattgattaatcccatttgtatagcttcttta-agttttcaatt |
13898403 |
T |
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| Q |
301 |
tgtcttgtctttggcatgatcttgccactataagtctagagaaaatt |
347 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13898402 |
tgtcttgtctttggcatgatcttgccactataagtctagagaaaatt |
13898356 |
T |
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