View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5791_low_2 (Length: 324)

Name: NF5791_low_2
Description: NF5791
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5791_low_2
NF5791_low_2
[»] chr5 (3 HSPs)
chr5 (90-224)||(290951-291085)
chr5 (217-312)||(291246-291341)
chr5 (5-76)||(294991-295062)
[»] chr7 (4 HSPs)
chr7 (17-155)||(40261425-40261563)
chr7 (10-157)||(47904235-47904383)
chr7 (21-85)||(38094696-38094760)
chr7 (49-103)||(26789034-26789088)
[»] chr3 (5 HSPs)
chr3 (38-148)||(35898860-35898970)
chr3 (39-155)||(35899590-35899707)
chr3 (4-85)||(47955220-47955301)
chr3 (48-148)||(18753730-18753831)
chr3 (4-85)||(47956101-47956182)
[»] chr8 (2 HSPs)
chr8 (5-92)||(37767499-37767586)
chr8 (37-88)||(32018221-32018272)
[»] chr2 (4 HSPs)
chr2 (15-85)||(26179625-26179695)
chr2 (10-103)||(2757739-2757832)
chr2 (10-85)||(2758464-2758539)
chr2 (4-85)||(16427597-16427677)
[»] chr1 (2 HSPs)
chr1 (10-98)||(38002940-38003028)
chr1 (10-86)||(38003589-38003665)
[»] chr6 (1 HSPs)
chr6 (19-85)||(9747427-9747493)
[»] chr4 (1 HSPs)
chr4 (19-92)||(11960095-11960168)


Alignment Details
Target: chr5 (Bit Score: 135; Significance: 2e-70; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 90 - 224
Target Start/End: Original strand, 290951 - 291085
Alignment:
Q  90 tttattatttaaatagataaagacctccctttgtatttcacaccgttagtctctgttaaataactcttgcccatctcttcttccactgttgctaatgtac 189  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  290951 tttattatttaaatagataaagacctccctttgtatttcacaccgttagtctctgttaaataactcttgcccatctcttcttccactgttgctaatgtac 291050  T
Q  190 tcatgaaaatttattttaattatgcatcttttata 224  Q
    |||||||||||||||||||||||||||||||||||    
T  291051 tcatgaaaatttattttaattatgcatcttttata 291085  T

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Target: chr5; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 217 - 312
Target Start/End: Original strand, 291246 - 291341
Alignment:
Q  217 cttttatagttggtatttaatttgttggctgataattattgtcctttatttggtttacaccttatcaaagctttctgtagaatatgaaaagataca 312  Q
    |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||    
T  291246 cttttataatttgtatttaatttgttggctgataattattgtcctttatttggtttacaccttatcaaagttttctgtagaatacgaagagataca 291341  T

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Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 5 - 76
Target Start/End: Complemental strand, 295062 - 294991
Alignment:
Q  5 ggtagattatactcacctcccttgaagtatttttaaatgacactaacaccccctctagtttttaactaaaca 76  Q
    |||| |||| ||||||||||||| | ||||| ||||||||||||||||||||||||||||||||| ||||||    
T  295062 ggtaaattacactcacctcccttcaggtattcttaaatgacactaacaccccctctagtttttaattaaaca 294991  T

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Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 155
Target Start/End: Complemental strand, 40261563 - 40261425
Alignment:
Q  17 tcacctcccttgaagtatttttaaatgacactaacaccccctctagtttttaactaaacaataacctcctttatttattatttaaatagataaagacctc 116  Q
    ||||||||||| | ||||| ||| |||||||||||| |||||||||||||||| |||||| |||||||| |||||| || | ||||| || ||  |||||    
T  40261563 tcacctcccttaaggtattcttatatgacactaacatcccctctagtttttaattaaacattaacctcccttatttgttgtctaaatggacaagcacctc 40261464  T
Q  117 cctttgtatttcacaccgttagtctctgttaaataactc 155  Q
    ||| ||||| | || | ||||||||| ||||||||||||    
T  40261463 cctctgtatctaacgctgttagtctccgttaaataactc 40261425  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 10 - 157
Target Start/End: Original strand, 47904235 - 47904383
Alignment:
Q  10 attatactcacctcccttgaagtattttt-aaatgacactaacaccccctctagtttttaactaaacaataacctcctttatttattatttaaatagata 108  Q
    |||| ||||||||||||| |||| ||||| |||| ||||| |||||||||||||||||||| | |||| |||  ||| |||||||||||| ||||||| |    
T  47904235 attacactcacctcccttaaagttttttttaaataacactgacaccccctctagtttttaagttaacactaatatcccttatttattattcaaatagaca 47904334  T
Q  109 aagacctccctttgtatttcacaccgttagtctctgttaaataactctt 157  Q
    |  ||||||||||  | || ||  ||||| |||||||||| ||||||||    
T  47904335 accacctcccttttcacttaacgtcgttactctctgttaattaactctt 47904383  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 38094696 - 38094760
Alignment:
Q  21 ctcccttgaagtatttttaaatgacactaacaccccctctagtttttaactaaacaataacctcc 85  Q
    ||||||||| || || ||||||  |||||||||||||||||||||| ||| ||||| ||||||||    
T  38094696 ctcccttgaggtcttcttaaatagcactaacaccccctctagttttgaacaaaacattaacctcc 38094760  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 103
Target Start/End: Complemental strand, 26789088 - 26789034
Alignment:
Q  49 aacaccccctctagtttttaactaaacaataacctcctttatttattatttaaat 103  Q
    ||||||||||||||||||||||||||||  ||||||| ||| || ||||| ||||    
T  26789088 aacaccccctctagtttttaactaaacacaaacctcccttaatttttattcaaat 26789034  T

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Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 38 - 148
Target Start/End: Original strand, 35898860 - 35898970
Alignment:
Q  38 taaatgacactaacaccccctctagtttttaactaaacaataacctcctttatttattatttaaatagataaagacctccctttgtatttcacaccgtta 137  Q
    ||||| |||||||||||||||||| ||||||||| |||| |||||||| |||||| ||||| ||||||| ||  ||||||||||  | ||  ||||||||    
T  35898860 taaataacactaacaccccctctattttttaactcaacactaacctcccttattttttattcaaatagacaaccacctcccttttcacttagcaccgtta 35898959  T
Q  138 gtctctgttaa 148  Q
    |||||||||||    
T  35898960 gtctctgttaa 35898970  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 39 - 155
Target Start/End: Complemental strand, 35899707 - 35899590
Alignment:
Q  39 aaatgacactaacaccccctctagtttttaactaaacaataacctcctttatttattatttaaatagataaagacctccctttgta-tttcacaccgtta 137  Q
    |||| |||||||||||||||||||||||||||| |||| |||||||| ||| || ||||  ||||||  ||| |||||||||| || ||  |||||||||    
T  35899707 aaattacactaacaccccctctagtttttaactcaacactaacctcccttaattgttatacaaataggcaaacacctccctttatacttaaacaccgtta 35899608  T
Q  138 gtctctgttaaataactc 155  Q
    |||||| |||| ||||||    
T  35899607 gtctctattaattaactc 35899590  T

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Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 4 - 85
Target Start/End: Original strand, 47955220 - 47955301
Alignment:
Q  4 gggtagattatactcacctcccttgaagtatttttaaatgacactaacaccccctctagtttttaactaaacaataacctcc 85  Q
    ||||| |||| |||||||||||||||||| || ||||||  |||||||||||||||||||||| || |||||| ||||||||    
T  47955220 gggtaaattacactcacctcccttgaagttttcttaaatagcactaacaccccctctagttttgaaataaacattaacctcc 47955301  T

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Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 48 - 148
Target Start/End: Complemental strand, 18753831 - 18753730
Alignment:
Q  48 taacaccccctctagtttttaactaaacaataacctccttta-tttattatttaaatagataaagacctccctttgtatttcacaccgttagtctctgtt 146  Q
    |||||||||||||| ||||||||| |||| |||||||| ||| ||| ||||| ||||||| ||  ||||||||||  | || ||||||||||||||||||    
T  18753831 taacaccccctctattttttaactcaacactaacctcccttatttttttattcaaatagacaaccacctcccttttcacttaacaccgttagtctctgtt 18753732  T
Q  147 aa 148  Q
    ||    
T  18753731 aa 18753730  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 85
Target Start/End: Complemental strand, 47956182 - 47956101
Alignment:
Q  4 gggtagattatactcacctcccttgaagtatttttaaatgacactaacaccccctctagtttttaactaaacaataacctcc 85  Q
    ||||| |||| ||||||||| ||||| || || ||||||  |||||||||||||||||||||  ||||||||| ||| ||||    
T  47956182 gggtaaattacactcacctctcttgaggtcttcttaaatagcactaacaccccctctagtttaaaactaaacactaatctcc 47956101  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 5 - 92
Target Start/End: Complemental strand, 37767586 - 37767499
Alignment:
Q  5 ggtagattatactcacctcccttgaagtatttttaaatgacactaacaccccctctagtttttaactaaacaataacctcctttattt 92  Q
    |||| |||| ||| ||||||| ||| ||||| |||||| |||| |||| |||||||||||||||||||||||  ||||||| ||||||    
T  37767586 ggtaaattacactaacctcccctgaggtattgttaaataacacaaacatcccctctagtttttaactaaacataaacctcccttattt 37767499  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 37 - 88
Target Start/End: Original strand, 32018221 - 32018272
Alignment:
Q  37 ttaaatgacactaacaccccctctagtttttaactaaacaataacctccttt 88  Q
    |||||| |||||||||  ||||||| |||||||||||||| |||||||||||    
T  32018221 ttaaataacactaacattccctctaatttttaactaaacactaacctccttt 32018272  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 15 - 85
Target Start/End: Complemental strand, 26179695 - 26179625
Alignment:
Q  15 actcacctcccttgaagtatttttaaatgacactaacaccccctctagtttttaactaaacaataacctcc 85  Q
    ||||||||||||||| || || |||||| |||| |||||||||||||||||| |||||||||  |||||||    
T  26179695 actcacctcccttgaggttttcttaaataacacaaacaccccctctagttttaaactaaacacaaacctcc 26179625  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 103
Target Start/End: Original strand, 2757739 - 2757832
Alignment:
Q  10 attatactcacctcccttgaagtatttttaaatgacactaacaccccctctagtttttaactaaacaataacctcctttatttattatttaaat 103  Q
    |||| ||||||||||||||| || || |||||| ||||||||| |||||||| ||||||| |||||| | || ||| ||| || ||||||||||    
T  2757739 attacactcacctcccttgaggtcttcttaaataacactaacatcccctctaatttttaattaaacacttacatccattaatttttatttaaat 2757832  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 85
Target Start/End: Complemental strand, 2758539 - 2758464
Alignment:
Q  10 attatactcacctcccttgaagtatttttaaatgacactaacaccccctctagtttttaactaaacaataacctcc 85  Q
    |||| ||||||||||||| | || || |||||| ||||||||| |||||||| |||| ||||||||| ||||||||    
T  2758539 attacactcacctcccttaaggtcttcttaaataacactaacatcccctctaattttaaactaaacactaacctcc 2758464  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 85
Target Start/End: Complemental strand, 16427677 - 16427597
Alignment:
Q  4 gggtagattatactcacctcccttgaagtatttttaaatgacactaacaccccctctagtttttaactaaacaataacctcc 85  Q
    ||||| |||| |||||||||| || || | || |||||| ||||||||| ||||||||||||| || |||||| ||||||||    
T  16427677 gggtaaattacactcacctcctttaaaattttcttaaataacactaaca-cccctctagttttgaaataaacattaacctcc 16427597  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 98
Target Start/End: Original strand, 38002940 - 38003028
Alignment:
Q  10 attatactcacctcccttgaagtatttttaaatgacactaacaccccctctagtttttaactaaacaataacctcctttatttattatt 98  Q
    |||| ||||||||||||| | || || ||||||  |||||||| |||||||||||||||| |||||| | |||||| ||| || |||||    
T  38002940 attacactcacctccctttaggttttcttaaatagcactaacatcccctctagtttttaattaaacacttacctcccttaatttttatt 38003028  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 86
Target Start/End: Complemental strand, 38003665 - 38003589
Alignment:
Q  10 attatactcacctcccttgaagtatttttaaatgacactaacaccccctctagtttttaactaaacaataacctcct 86  Q
    |||| ||||||||||||| | || || ||||||  |||||||| |||||||| |||||||||||||| |||| ||||    
T  38003665 attacactcacctcccttaaggtcttcttaaatagcactaacaacccctctactttttaactaaacactaacttcct 38003589  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 9747427 - 9747493
Alignment:
Q  19 acctcccttgaagtatttttaaatgacactaacaccccctctagtttttaactaaacaataacctcc 85  Q
    ||||||||| |||| | ||||||||||||| | ||||||||||||||| ||||| ||| | ||||||    
T  9747427 acctcccttaaagtctctttaaatgacacttagaccccctctagttttaaactagacattcacctcc 9747493  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 92
Target Start/End: Original strand, 11960095 - 11960168
Alignment:
Q  19 acctcccttgaagtatttttaaatgacactaacaccccctctagtttttaactaaacaataacctcctttattt 92  Q
    ||||||||||| || |  ||||||  ||| |||||||||||||||||| |||||||||  ||||||| ||||||    
T  11960095 acctcccttgaggtttagttaaatagcacaaacaccccctctagttttaaactaaacacaaacctcccttattt 11960168  T

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