View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5792-Insertion-2 (Length: 790)
Name: NF5792-Insertion-2
Description: NF5792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5792-Insertion-2 |
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Alignment Details
Target: chr5 (Bit Score: 682; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 682; E-Value: 0
Query Start/End: Original strand, 8 - 789
Target Start/End: Original strand, 8252460 - 8253240
Alignment:
| Q |
8 |
tgtttgttaacatgaggtccacttgtagatgtagaattaaaagtgacatttttatttgatgttaaatcacctctctctccgacaagcttttggcttttta |
107 |
Q |
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| T |
8252460 |
tgtttgttaacatgaggtccacttgtagatgtagaattaaaagtgacatttttatttgatgttaaatcacctccctctccgacaagcttttggcttttta |
8252559 |
T |
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| Q |
108 |
aaaaatccaaactccaaggacctgaatttgctgaacgaccccttcccggaggacaagatgttgtgcgttgtataattctcggaccttgcaataaccgatc |
207 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
8252560 |
aaaaatccaaactccaaggacccgaatttgctgaacgaccccttcccgaaggacaagatgttgtgcgttgtataattctcggacctcgcaataaccgatc |
8252659 |
T |
|
| Q |
208 |
tcgcctactgccccctccaacagaaacacttgcgtcaccatgattttcacctaaaacattaataatgaccaattttccactatcaaccgatgcaccagca |
307 |
Q |
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| T |
8252660 |
tcgcctactgccccctccaacagaaacacttgcgtcaccatgattttcacctgaaacattaataatggccaattttccactatcaaccgatgcaccagca |
8252759 |
T |
|
| Q |
308 |
acatgaacaggctgctccccttcattattgtgtatcgaagatttacttggtaaggaagtgcccacattaattaaaggaatggctgaaacttcaaataaat |
407 |
Q |
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||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8252760 |
acatgaacaggttgttccccttcattattgtgtatcgaagatttacttggtaaggaagtgcccacattaattaaaggaatggctgaaacttcaaataaat |
8252859 |
T |
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| Q |
408 |
gatttggatccttctcaaaattagcgctagaaccattgcctacannnnnnnngttagcgctagaaccattgccttgagaaacatttcttttatcaaatga |
507 |
Q |
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| T |
8252860 |
gatttggttccttctcaaaattagcgctagaaccattgcctacattttttttgttagcgctagaaccattgccttgagaaacatttcttttatcaaatga |
8252959 |
T |
|
| Q |
508 |
gttagacacaccacctacatgcccctcttcgtgataatcctctaaaatatgtttcaaaaattcatcaacctctcgtcgaccatcaaaagcctcatgtgat |
607 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8252960 |
gttagacacaccacctacatgcccctcttcgtgataatcctctgaaatatgtctcaaaaattcatcaacctctcgtcgaccatcaaaagcctcatgtgat |
8253059 |
T |
|
| Q |
608 |
ttaaccatatcagaatgtgcgtcctcgcctaaagtgaatccccattccttgataattttgaaaataaagaagcaccccatccaccacaaccttagcatag |
707 |
Q |
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| T |
8253060 |
tcaaccatatcagaatgtgcgtcctcgcctaaagtgaatccccattcctcaataattttg-aaataaagaagcaccccgtccaccacaaccttagcatag |
8253158 |
T |
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| Q |
708 |
acattaatcacgtccaacgacgacgttgcaaccaaaacacgtgcataatccaacccgtccttatcccgagtaaaattgtcga |
789 |
Q |
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| T |
8253159 |
acattaatcacgtccaacgacgacgttgcaaccaaaacacgtgcataatccaacctgtccttatccagagtaaaattgtcga |
8253240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 629 - 762
Target Start/End: Complemental strand, 22557940 - 22557808
Alignment:
| Q |
629 |
tcctcgcctaaagtgaatccccattccttgataattttgaaaataaagaagcaccccatccaccacaaccttagcatagacattaatcacgtccaacgac |
728 |
Q |
| |
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||||| ||||||| |||||||||||| | |||||||| |||||||| || |||||||||||||| || ||||||| ||| ||||| ||||||||| |
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| T |
22557940 |
tcctcccctaaagagaatccccattcttcaataatttt-aaaataaaaaatcaccccatccaccataatcttagcacctgtattgatcacctccaacgac |
22557842 |
T |
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| Q |
729 |
gacgttgcaaccaaaacacgtgcataatccaacc |
762 |
Q |
| |
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|| || |||| |||||| | ||||||||| |||| |
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| T |
22557841 |
gaagtagcaatcaaaacccttgcataatcaaacc |
22557808 |
T |
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