View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5792-Insertion-4 (Length: 420)
Name: NF5792-Insertion-4
Description: NF5792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5792-Insertion-4 |
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Alignment Details
Target: chr4 (Bit Score: 162; Significance: 2e-86; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 8 - 256
Target Start/End: Complemental strand, 24751367 - 24751116
Alignment:
| Q |
8 |
attccaactacacttgtaaacctcttcaacttaatgcaacttcatctccgcaacaacgccattggaggccccatttaaggactagcag---acttggact |
104 |
Q |
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| T |
24751367 |
attccaactacacttgtaaacctcttcaacttaatgcaacttgatctccgcaacaacaccattggaggccccatttaagggctagcagcagacttggact |
24751268 |
T |
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| Q |
105 |
tgtcgttgaaccgattatccggtctaagtccttttacgttaggataaatgttggtcctggcctcgttgaacctgaagtatagaaacttgacaggaaggat |
204 |
Q |
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||| |||||| |||||| |||||||| ||||||||| ||||||| | || |||||||| || |||||||||||||||||||||||||| |||||||| |
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| T |
24751267 |
tgttgttgaatcgattacgcggtctaattccttttacactaggatacacgtcggtcctggtcttgttgaacctgaagtatagaaacttgatgggaaggat |
24751168 |
T |
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| Q |
205 |
cccaaggactttgttggcttatagaatgaaccatttggatttaagtagaaac |
256 |
Q |
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|||||||||||||||||||| |||||||| |||||||||||||||||||||| |
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| T |
24751167 |
cccaaggactttgttggcttctagaatgagccatttggatttaagtagaaac |
24751116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 252 - 419
Target Start/End: Complemental strand, 24751082 - 24750913
Alignment:
| Q |
252 |
gaaacttcatatttcattaaccttgatctgccgcagaactatttgaatggtttaattcataagtctatggcattagctttgtacaattttcat--atgga |
349 |
Q |
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| T |
24751082 |
gaaacttcatatttcattaaccttgatctgccgcggaacaatttgaacggtttaattcctaagtctatggcattagctttgtacatttttcatacatgga |
24750983 |
T |
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| Q |
350 |
ctttacacatagccgtctctttgggagaatttcagttgcttcttccttaagccatctacagccggcatca |
419 |
Q |
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| T |
24750982 |
ctttactcacaaccgtctctttgggagaatttcggttgcttcttccttacgccatctacagccggcatca |
24750913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 80 - 256
Target Start/End: Original strand, 51501252 - 51501428
Alignment:
| Q |
80 |
atttaaggactagcagacttggacttgtcgttgaaccgattatccggtctaagtccttttacgttaggataaatgttggtcctggcctcgttgaacctga |
179 |
Q |
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||||| || ||||||||||||||||| ||||||||||||||||| |||| || ||||||| || ||||| ||||| |||| ||| |||||||||||||| |
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| T |
51501252 |
atttatgggctagcagacttggacttatcgttgaaccgattatctggtccaattcctttttcgctaggacaaatgccggtcttggactcgttgaacctga |
51501351 |
T |
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| Q |
180 |
agtatagaaacttgacaggaaggatcccaaggactttgttggcttatagaatgaaccatttggatttaagtagaaac |
256 |
Q |
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| T |
51501352 |
agtataacaaattgactgggaggatcccaaggactttgttggcttctagaatgagtcatttggatttaagtagaaac |
51501428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 90 - 255
Target Start/End: Complemental strand, 24766331 - 24766166
Alignment:
| Q |
90 |
tagcagacttggacttgtcgttgaaccgattatccggtctaagtccttttacgttaggataaatgttggtcctggcctcgttgaacctgaagtatagaaa |
189 |
Q |
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||||||||||||||||||| ||||||| ||||||||||| || ||||||| || ||||| |||||| ||| ||| |||| ||||||||||||||| || |
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| T |
24766331 |
tagcagacttggacttgtccttgaaccaattatccggtccaattcctttttcgctaggacaaatgtcagtcatggactcgctgaacctgaagtataacaa |
24766232 |
T |
|
| Q |
190 |
cttgacaggaaggatcccaaggactttgttggcttatagaatgaaccatttggatttaagtagaaa |
255 |
Q |
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| T |
24766231 |
attgacaggaaggatcccaagtactttgttggcttctagaatgagccatttagatttaagtagaaa |
24766166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 252 - 419
Target Start/End: Original strand, 51501462 - 51501629
Alignment:
| Q |
252 |
gaaacttcatatttcattaaccttgatctgccgcagaactatttgaatggtttaattcataagtctatggcattagctttgtacaattttcatatggact |
351 |
Q |
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||||||||||||||||||||||||||| || ||| |||| ||||||| |||||||||| |||||| ||||||||||||||||||| | ||| |||||| |
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| T |
51501462 |
gaaacttcatatttcattaaccttgatttgtcgcggaacaatttgaacggtttaattcctaagtcgatggcattagctttgtacattggccatgtggact |
51501561 |
T |
|
| Q |
352 |
ttacacatagccgtctctttgggagaatttcagttgcttcttccttaagccatctacagccggcatca |
419 |
Q |
| |
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||| || | || ||||||||||| |||| | ||||||||||||||||||||||| | |||||||||| |
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| T |
51501562 |
ttagtcacaaccatctctttgggaaaattccggttgcttcttccttaagccatcttccgccggcatca |
51501629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 252 - 418
Target Start/End: Complemental strand, 24766131 - 24765965
Alignment:
| Q |
252 |
gaaacttcatatttcattaaccttgatctgccgcagaactatttgaatggtttaattcataagtctatggcattagctttgtacaattttcatatggact |
351 |
Q |
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|
||||||||||||||||| ||||||||| || ||| |||| ||||||| |||||||||| ||| ||||||||| |||||||||||| | ||| |||||| |
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| T |
24766131 |
gaaacttcatatttcatcaaccttgatttgtcgcggaacaatttgaacggtttaattcctaattctatggcaatagctttgtacattggccatgtggact |
24766032 |
T |
|
| Q |
352 |
ttacacatagccgtctctttgggagaatttcagttgcttcttccttaagccatctacagccggcatc |
418 |
Q |
| |
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||| || | || ||||||||||| |||| | |||||||||||||||||||||| ||||| ||||| |
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| T |
24766031 |
ttagtcacaaccatctctttgggaaaattccgattgcttcttccttaagccatcttcagcccgcatc |
24765965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 8 - 82
Target Start/End: Original strand, 51501087 - 51501161
Alignment:
| Q |
8 |
attccaactacacttgtaaacctcttcaacttaatgcaacttcatctccgcaacaacgccattggaggccccatt |
82 |
Q |
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|||||||| || |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |
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| T |
51501087 |
attccaacaacgcttgtaaacctcttcaacttaatgcaacttgatctccgtaacaacgccattggaggccccatt |
51501161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 8 - 78
Target Start/End: Complemental strand, 24766506 - 24766436
Alignment:
| Q |
8 |
attccaactacacttgtaaacctcttcaacttaatgcaacttcatctccgcaacaacgccattggaggccc |
78 |
Q |
| |
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|||||||| || |||||||||||||||||||||||||||||| |||||| |||||| || ||||||||||| |
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| T |
24766506 |
attccaacaacgcttgtaaacctcttcaacttaatgcaacttgatctccacaacaatgctattggaggccc |
24766436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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