View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5792-Insertion-6 (Length: 215)

Name: NF5792-Insertion-6
Description: NF5792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5792-Insertion-6
NF5792-Insertion-6
[»] chr3 (3 HSPs)
chr3 (8-215)||(40880669-40880876)
chr3 (13-215)||(40899603-40899805)
chr3 (13-215)||(40904169-40904371)


Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 8 - 215
Target Start/End: Complemental strand, 40880876 - 40880669
Alignment:
Q  8 aatccaaacattggaatctcctatacctgtgcatattccacagctgagaatacaaactttgtcaagaggcgcatcagggttgatctttgcaacacatcca 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||    
T  40880876 aatccaaacattggaatctcctatacctgtgcatattccacagctgagaatacaaactttatcaagaggtgcatcagggttgatctttgcaacacatcca 40880777  T
Q  108 gcatgaaccacagtgtattcactgaatgtcgatgtaccgacgaaatggtggatgggctgtcctttaatagagaatcttgactgattgtcattgatcataa 207  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  40880776 gcatgaaccacagtgtattcactgaatgtcgatgtaccgacaaaatggtgaatgggctgtcccttaatagagaatcttgactgattgtcattgatcataa 40880677  T
Q  208 cacccctg 215  Q
    ||||||||    
T  40880676 cacccctg 40880669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 13 - 215
Target Start/End: Complemental strand, 40899805 - 40899603
Alignment:
Q  13 aaacattggaatctcctatacctgtgcatattccacagctgagaatacaaactttgtcaagaggcgcatcagggttgatctttgcaacacatccagcatg 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||    
T  40899805 aaacattggaatctcctatacctgtgcatattccacagctgagaatacaaactttgtcaagtggtgcatcagggttgatctttgcaacacatccggcatg 40899706  T
Q  113 aaccacagtgtattcactgaatgtcgatgtaccgacgaaatggtggatgggctgtcctttaatagagaatcttgactgattgtcattgatcataacaccc 212  Q
    |||||||||||| || |||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||    
T  40899705 aaccacagtgtactcgctgaatgtagatgtaccgacgaaatggtgaatgggctgtcccttaatagagaatcttgactggttgtcattgatcataacaccc 40899606  T
Q  213 ctg 215  Q
    |||    
T  40899605 ctg 40899603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 13 - 215
Target Start/End: Complemental strand, 40904371 - 40904169
Alignment:
Q  13 aaacattggaatctcctatacctgtgcatattccacagctgagaatacaaactttgtcaagaggcgcatcagggttgatctttgcaacacatccagcatg 112  Q
    ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||    
T  40904371 aaacactggaatctcctatacctgtgcatattccacagctaagaatacaaactttgtcaagtggtgcatcagggttgatctttgcaacacatccggcatg 40904272  T
Q  113 aaccacagtgtattcactgaatgtcgatgtaccgacgaaatggtggatgggctgtcctttaatagagaatcttgactgattgtcattgatcataacaccc 212  Q
    |||||||||||| || |||||||| |||||||||||||||||||| ||||||||||| |||| ||||||||||||||| |||||||||||||||||||||    
T  40904271 aaccacagtgtactcgctgaatgtagatgtaccgacgaaatggtgaatgggctgtcccttaagagagaatcttgactggttgtcattgatcataacaccc 40904172  T
Q  213 ctg 215  Q
    |||    
T  40904171 ctg 40904169  T

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