View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5792_high_11 (Length: 296)

Name: NF5792_high_11
Description: NF5792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5792_high_11
NF5792_high_11
[»] chr1 (19 HSPs)
chr1 (1-284)||(8927153-8927436)
chr1 (1-284)||(8939579-8939859)
chr1 (15-284)||(8962506-8962772)
chr1 (14-277)||(9466372-9466632)
chr1 (36-250)||(9364633-9364844)
chr1 (36-250)||(9337774-9337985)
chr1 (95-277)||(9300303-9300485)
chr1 (36-271)||(9242200-9242432)
chr1 (30-271)||(9257159-9257401)
chr1 (90-265)||(9377939-9378114)
chr1 (90-250)||(9236119-9236279)
chr1 (95-241)||(9069627-9069773)
chr1 (95-215)||(8861517-8861637)
chr1 (94-211)||(9437484-9437601)
chr1 (95-199)||(9125095-9125199)
chr1 (95-217)||(9085923-9086045)
chr1 (94-210)||(9420401-9420517)
chr1 (96-150)||(52174469-52174523)
chr1 (94-199)||(8978916-8979021)
[»] chr3 (1 HSPs)
chr3 (15-277)||(9171712-9171971)
[»] scaffold0690 (2 HSPs)
scaffold0690 (36-271)||(1821-2053)
scaffold0690 (36-130)||(4961-5052)
[»] chr6 (1 HSPs)
chr6 (36-271)||(15910053-15910285)


Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 8927436 - 8927153
Alignment:
Q  1 ttgggatatatacgtctccaccttcaattaaaccatggatccaatctggatacagaacttggaaattttcttcaccaccagtagttgttttagtattctt 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  8927436 ttgggatatatacgtctccaccttcaagtaaaccatggatccaatctggatacagaacttggaaattttcttcgccaccagtagttgttttagtattctt 8927337  T
Q  101 tcttcctccaaccatttccagcaacaacatgccgtagctgtatatatcagccttctaagagacattcccaaagtttcgagaaaaaacttcaggtgccatg 200  Q
    ||||||||||||||| || ||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||    
T  8927336 tcttcctccaaccatctctagcaacaacataccgtagctgtatatatcagacttataagagacattcccaaagtttcgagaaaaaacttcaggtgccatg 8927237  T
Q  201 taccctaaagttcccctggctgcggtcatcgatactatactttgatttttggagcacagcttagctaaaccgaagtccgatatt 284  Q
    || ||||| |||||||||||||| |||||||||||  | || |||||||| ||||||||||| |||||||||||||||||||||    
T  8927236 taacctaatgttcccctggctgcagtcatcgatacagtgctatgatttttagagcacagcttcgctaaaccgaagtccgatatt 8927153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 8939859 - 8939579
Alignment:
Q  1 ttgggatatatacgtctccaccttcaattaaaccatggatccaatctggatacagaacttggaaattttcttcaccaccagtagttgttttagtattctt 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||||| ||||||||||||||    ||   ||| |||||||||||    
T  8939859 ttgggatatatacgtctccaccttcaaataaaccatggatccaatctggatacaatacttgaaaattttcttcacct---gtgactgtcttagtattctt 8939763  T
Q  101 tcttcctccaaccatttccagcaacaacatgccgtagctgtatatatcagccttctaagagacattcccaaagtttcgagaaaaaacttcaggtgccatg 200  Q
    ||||||||||||||| ||||||| |||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||    
T  8939762 tcttcctccaaccatctccagcagcaacataccgtagctgtatatatcagacttataagagacattcccaaagtttcgagaaaaaacttcaggtgccatg 8939663  T
Q  201 taccctaaagttcccctggctgcggtcatcgatactatactttgatttttggagcacagcttagctaaaccgaagtccgatatt 284  Q
    ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||||    
T  8939662 taccctaaagttcccctggctgcggtcattgatactgtactttgatttttggagcacagcttagctaaaccgaagtctgatatt 8939579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 15 - 284
Target Start/End: Complemental strand, 8962772 - 8962506
Alignment:
Q  15 tctccaccttcaattaaaccatggatccaatctggatacagaacttggaaattttcttcaccaccagtagttgttttagtattctttcttcctccaacca 114  Q
    ||||| |||||||  ||||| ||||||||||||||||||| |||||| |||||||||||| |    ||   ||| |||||||||||||||||||| ||||    
T  8962772 tctcccccttcaaacaaaccgtggatccaatctggatacaaaacttgaaaattttcttcatct---gtgactgtcttagtattctttcttcctccgacca 8962676  T
Q  115 tttccagcaacaacatgccgtagctgtatatatcagccttctaagagacattcccaaagtttcgagaaaaaacttcaggtgccatgtaccctaaagttcc 214  Q
    | ||||||| |||||| || ||||||||||||||||  || ||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||    
T  8962675 tctccagcagcaacattccatagctgtatatatcagatttataagagacattcccaaagtttcgagaaaatacttcaggtgccatgtatcctaatgttcc 8962576  T
Q  215 cctggctgcggtcatcgatactatactttgatttttggagcacagcttagctaaaccgaagtccgatatt 284  Q
    ||| || || ||||||||||| ||| |||||||||||||||||| ||| |||||||| ||||| ||||||    
T  8962575 cctagccgcagtcatcgatacaatagtttgatttttggagcacaacttggctaaaccaaagtctgatatt 8962506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 14 - 277
Target Start/End: Original strand, 9466372 - 9466632
Alignment:
Q  14 gtctccaccttcaattaaaccatggatccaatctggatacagaacttggaaattttcttcaccaccagtagttgttttagtattctttcttcctccaacc 113  Q
    |||||| |||||||  ||| | ||||||||||||||||| |||||||| ||||||||||||||    || ||||| || ||||||||||||||| |||||    
T  9466372 gtctcccccttcaagcaaatcgtggatccaatctggatatagaacttgtaaattttcttcacct---gtggttgtgtttgtattctttcttcctgcaacc 9466468  T
Q  114 atttccagcaacaacatgccgtagctgtatatatcagccttctaagagacattcccaaagtttcgagaaaaaacttcaggtgccatgtaccctaaagttc 213  Q
    || |||| ||||||||| || || || |||||||||| ||| || ||||||||||| ||||||| |||||||||||| ||||||||||| ||||| ||||    
T  9466469 atctccaacaacaacataccataactatatatatcagacttatatgagacattcccgaagtttctagaaaaaacttcgggtgccatgtagcctaacgttc 9466568  T
Q  214 ccctggctgcggtcatcgatactatactttgatttttggagcacagcttagctaaaccgaagtc 277  Q
    |  ||||||||||||| || ||| ||||| ||||||| ||||||| |||||| |||||||||||    
T  9466569 ctttggctgcggtcatagacactgtacttcgatttttcgagcacatcttagccaaaccgaagtc 9466632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 36 - 250
Target Start/End: Complemental strand, 9364844 - 9364633
Alignment:
Q  36 tggatccaatctggatacagaacttggaaattttcttcaccaccagtagttgttttagtattctttcttcctccaaccatttccagcaacaacatgccgt 135  Q
    |||||||| |||||||||  |||||| | ||||||||| ||||   || ||||||| |||||||||||||||||||||||||||| ||| ||||| ||||    
T  9364844 tggatccagtctggatactcaacttgtatattttcttcgccac---taattgtttttgtattctttcttcctccaaccatttccaacaataacataccgt 9364748  T
Q  136 agctgtatatatcagccttctaagagacattcccaaagtttcgagaaaaaacttcaggtgccatgtaccctaaagttcccctggctgcggtcatcgatac 235  Q
    | ||||||||||||| ||| ||||||||||| ||||||||||  ||||||||||||||||||||||| ||||| |||||| | ||||| ||||| |||||    
T  9364747 aactgtatatatcagacttataagagacattaccaaagtttcttgaaaaaacttcaggtgccatgtagcctaatgttcccttagctgcagtcatggatac 9364648  T
Q  236 tatactttgattttt 250  Q
     ||||||||||||||    
T  9364647 gatactttgattttt 9364633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 36 - 250
Target Start/End: Complemental strand, 9337985 - 9337774
Alignment:
Q  36 tggatccaatctggatacagaacttggaaattttcttcaccaccagtagttgttttagtattctttcttcctccaaccatttccagcaacaacatgccgt 135  Q
    |||||||| |||||||||  |||||| | ||||||||| ||||   || ||||||| |||||||||||||||||||||||||||| ||| ||||| ||||    
T  9337985 tggatccagtctggatactcaacttgtatattttcttcgccac---taattgtttttgtattctttcttcctccaaccatttccaacaataacataccgt 9337889  T
Q  136 agctgtatatatcagccttctaagagacattcccaaagtttcgagaaaaaacttcaggtgccatgtaccctaaagttcccctggctgcggtcatcgatac 235  Q
    | ||||||||||||| ||| ||||||||||| ||||||||||  ||||||||||||||||||||||| ||||| |||||| | ||||| ||||| |||||    
T  9337888 aactgtatatatcagacttataagagacattaccaaagtttcttgaaaaaacttcaggtgccatgtagcctaatgttcccttagctgcagtcatggatac 9337789  T
Q  236 tatactttgattttt 250  Q
     | ||||||||||||    
T  9337788 gacactttgattttt 9337774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 95 - 277
Target Start/End: Complemental strand, 9300485 - 9300303
Alignment:
Q  95 attctttcttcctccaaccatttccagcaacaacatgccgtagctgtatatatcagccttctaagagacattcccaaagtttcgagaaaaaacttcaggt 194  Q
    |||||| ||||| |||||||| ||||||||||||||||| || || |||||||| | ||| |||||||||||||||||||||| |||||||||||| |||    
T  9300485 attcttccttcccccaaccatctccagcaacaacatgccataactatatatatcggacttataagagacattcccaaagtttctagaaaaaacttcgggt 9300386  T
Q  195 gccatgtaccctaaagttcccctggctgcggtcatcgatactatactttgatttttggagcacagcttagctaaaccgaagtc 277  Q
    |||||||| ||||| |||||  |||| |||||||| ||||   ||||||||||||| ||||||| |||||| |||||||||||    
T  9300385 gccatgtatcctaatgttcctttggccgcggtcatagatatagtactttgatttttcgagcacatcttagccaaaccgaagtc 9300303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 36 - 271
Target Start/End: Original strand, 9242200 - 9242432
Alignment:
Q  36 tggatccaatctggatacagaacttggaaattttcttcaccaccagtagttgttttagtattctttcttcctccaaccatttccagcaacaacatgccgt 135  Q
    |||||||| |||||||||  || ||| | ||||||||||||||| ||   |||||| ||||||||||||||||||||||| |||| ||| ||||| ||||    
T  9242200 tggatccagtctggatactcaatttgtatattttcttcaccacctgt---tgtttttgtattctttcttcctccaaccatctccaacaataacataccgt 9242296  T
Q  136 agctgtatatatcagccttctaagagacattcccaaagtttcgagaaaaaacttcaggtgccatgtaccctaaagttcccctggctgcggtcatcgatac 235  Q
    | ||||||| ||| | ||| ||||||||||| ||||| |||| |||||||||||||||||||||||| ||||  |||||| | || || ||||| |||||    
T  9242297 aactgtatacatcggacttataagagacatttccaaaatttctagaaaaaacttcaggtgccatgtagcctactgttcccttagccgcagtcatggatac 9242396  T
Q  236 tatactttgatttttggagcacagcttagctaaacc 271  Q
     |||||||||||||| || |||| ||| || |||||    
T  9242397 aatactttgatttttcgaacacatcttggccaaacc 9242432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 30 - 271
Target Start/End: Original strand, 9257159 - 9257401
Alignment:
Q  30 aaaccatggatccaatctggatacagaacttggaaattttcttcaccaccagtagttgttttagtattctttcttcctccaaccatttccagcaacaaca 129  Q
    ||||| ||||||||||||||||| |||||||| || |||||||||      || ||||  || |||||||||||||||||||| |||||||  | ||| |    
T  9257159 aaaccgtggatccaatctggatatagaacttgaaagttttcttcattt---gtggttggatttgtattctttcttcctccaacaatttccaatagcaata 9257255  T
Q  130 tgccgtagctgtatatatcagcctt----ctaagagacattcccaaagtttcgagaaaaaacttcaggtgccatgtaccctaaagttcccctggctgcgg 225  Q
    | || ||||| |||||||||| |||     ||||||||||| |||||||||| |||||||||||| ||||||||||| ||||| ||||| || ||||| |    
T  9257256 taccatagctatatatatcagacttataattaagagacattaccaaagtttctagaaaaaacttcgggtgccatgtatcctaatgttcctctcgctgcag 9257355  T
Q  226 tcatcgatactatactttgatttttggagcacagcttagctaaacc 271  Q
    |||| ||||   ||||||||||||| ||||||| |||||| |||||    
T  9257356 tcatagatatagtactttgattttttgagcacatcttagccaaacc 9257401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 90 - 265
Target Start/End: Complemental strand, 9378114 - 9377939
Alignment:
Q  90 ttagtattctttcttcctccaaccatttccagcaacaacatgccgtagctgtatatatcagccttctaagagacattcccaaagtttcgagaaaaaactt 189  Q
    |||||||||||||| ||||||||||| || |||||||| || |||||||| || ||||||| ||| ||||| ||||| || |||||||  || |||||||    
T  9378114 ttagtattctttctacctccaaccatctctagcaacaatattccgtagctataaatatcagacttgtaagaaacatttccgaagtttcttgagaaaactt 9378015  T
Q  190 caggtgccatgtaccctaaagttcccctggctgcggtcatcgatactatactttgatttttggagcacagcttagc 265  Q
    ||||||| ||||| || || ||||| || |||||||| || || ||  |||||||||||||||  ||||| |||||    
T  9378014 caggtgcaatgtagcccaatgttcctctagctgcggttatagacaccgtactttgatttttgggacacagtttagc 9377939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 90 - 250
Target Start/End: Original strand, 9236119 - 9236279
Alignment:
Q  90 ttagtattctttcttcctccaaccatttccagcaacaacatgccgtagctgtatatatcagccttctaagagacattcccaaagtttcgagaaaaaactt 189  Q
    ||||||||||||||||| |||||||| || ||||||||||| |||||||| || ||||||| ||| ||||| ||||| || |||||||  || |||||||    
T  9236119 ttagtattctttcttccaccaaccatctcaagcaacaacataccgtagctataaatatcagacttataagaaacatttccgaagtttctcgagaaaactt 9236218  T
Q  190 caggtgccatgtaccctaaagttcccctggctgcggtcatcgatactatactttgattttt 250  Q
    ||||||| ||||| || || ||||| || ||||| ||||| || ||| | ||||| |||||    
T  9236219 caggtgcaatgtatcccaaggttcctctcgctgcagtcatagacactgtgctttggttttt 9236279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 95 - 241
Target Start/End: Original strand, 9069627 - 9069773
Alignment:
Q  95 attctttcttcctccaaccatttccagcaacaacatgccgtagctgtatatatcagccttctaagagacattcccaaagtttcgagaaaaaacttcaggt 194  Q
    |||||||||||||||||||||||| ||||||||||| || || ||||||||||||| |||   ||| ||||| ||||| |||||||| |  ||||| |||    
T  9069627 attctttcttcctccaaccatttctagcaacaacattccataactgtatatatcagacttaagagaaacatttccaaaatttcgagacactacttcgggt 9069726  T
Q  195 gccatgtaccctaaagttcccctggctgcggtcatcgatactatact 241  Q
    ||||| || || || |||||||| || || ||||| || ||||||||    
T  9069727 gccatatatcccaaggttcccctagcagctgtcatggacactatact 9069773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 95 - 215
Target Start/End: Original strand, 8861517 - 8861637
Alignment:
Q  95 attctttcttcctccaaccatttccagcaacaacatgccgtagctgtatatatcagccttctaagagacattcccaaagtttcgagaaaaaacttcaggt 194  Q
    ||||||||| |||||||||||||| ||||||||||| ||||| ||||| ||||| | |||   ||| ||||||||||| ||||  || | |||||||||     
T  8861517 attctttctccctccaaccatttctagcaacaacattccgtaactgtaaatatctgacttaagagacacattcccaaaatttcttgatagaacttcaggc 8861616  T
Q  195 gccatgtaccctaaagttccc 215  Q
    |||||||| || || ||||||    
T  8861617 gccatgtatcccaaggttccc 8861637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 94 - 211
Target Start/End: Original strand, 9437484 - 9437601
Alignment:
Q  94 tattctttcttcctccaaccatttccagcaacaacatgccgtagctgtatatatcagccttctaagagacattcccaaagtttcgagaaaaaacttcagg 193  Q
    |||| |||||||||||||||||||| ||||  ||||| || || || ||||| ||||| || || || ||||| |||||||| |  ||||| ||||||||    
T  9437484 tattttttcttcctccaaccatttcaagcagtaacatcccataactatatatgtcagctttatacgatacatttccaaagttcctcgaaaacacttcagg 9437583  T
Q  194 tgccatgtaccctaaagt 211  Q
    ||| ||||| ||||||||    
T  9437584 tgcaatgtaacctaaagt 9437601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 95 - 199
Target Start/End: Original strand, 9125095 - 9125199
Alignment:
Q  95 attctttcttcctccaaccatttccagcaacaacatgccgtagctgtatatatcagccttctaagagacattcccaaagtttcgagaaaaaacttcaggt 194  Q
    |||||| | ||||||||||| ||||||||||||||| || || || || ||||||| |||   ||| ||||| ||||| ||||| || ||||||||||||    
T  9125095 attcttgcgtcctccaaccaattccagcaacaacatcccataactataaatatcagacttacgagaaacatttccaaaatttcgtgacaaaacttcaggt 9125194  T
Q  195 gccat 199  Q
    |||||    
T  9125195 gccat 9125199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 95 - 217
Target Start/End: Original strand, 9085923 - 9086045
Alignment:
Q  95 attctttcttcctccaaccatttccagcaacaacatgccgtagctgtatatatcagccttctaagagacattcccaaagtttcgagaaaaaacttcaggt 194  Q
    |||||| ||||| |||||||| || ||||||||||| || || || || ||||||| |||   ||| ||||||||||| ||||| || |||||||||||     
T  9085923 attcttccttccaccaaccatctctagcaacaacatcccataactataaatatcagacttaagagaaacattcccaaaatttcgtgacaaaacttcaggc 9086022  T
Q  195 gccatgtaccctaaagttcccct 217  Q
    ||||| || || || ||||||||    
T  9086023 gccatatatcccaaggttcccct 9086045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 210
Target Start/End: Original strand, 9420401 - 9420517
Alignment:
Q  94 tattctttcttcctccaaccatttccagcaacaacatgccgtagctgtatatatcagccttctaagagacattcccaaagtttcgagaaaaaacttcagg 193  Q
    |||| |||||||||||||||||||| || |  ||||| || || || ||||| ||||| || || || ||||| |||||||| |  ||||| ||||||||    
T  9420401 tattttttcttcctccaaccatttcaagaagtaacatcccataactatatatgtcagctttatacgatacatttccaaagttcctcgaaaacacttcagg 9420500  T
Q  194 tgccatgtaccctaaag 210  Q
    ||| ||||| |||||||    
T  9420501 tgcaatgtaacctaaag 9420517  T

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Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Complemental strand, 52174523 - 52174469
Alignment:
Q  96 ttctttcttcctccaaccatttccagcaacaacatgccgtagctgtatatatcag 150  Q
    |||||||||||||||| |||||| || | ||||||||| || |||||||||||||    
T  52174523 ttctttcttcctccaatcatttcaagaatcaacatgccataactgtatatatcag 52174469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 199
Target Start/End: Original strand, 8978916 - 8979021
Alignment:
Q  94 tattctttcttcctccaaccatttccagcaacaacatgccgtagctgtatatatcagccttctaagagacattcccaaagtttcgagaaaaaacttcagg 193  Q
    ||||||| |||||| |||||||||| ||||||||||| || ||||| || |||||||  ||   ||| ||||| ||||| ||||  || | |||||||||    
T  8978916 tattcttccttcctgcaaccatttctagcaacaacattccatagctataaatatcagatttaagagacacattaccaaaatttcttgacagaacttcagg 8979015  T
Q  194 tgccat 199  Q
    ||||||    
T  8979016 tgccat 8979021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 109; Significance: 7e-55; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 15 - 277
Target Start/End: Complemental strand, 9171971 - 9171712
Alignment:
Q  15 tctccaccttcaattaaaccatggatccaatctggatacagaacttggaaattttcttcaccaccagtagttgttttagtattctttcttcctccaacca 114  Q
    ||||| |||||||  ||||  |||||||||||||||||||||||||| ||||||||||||      || ||||| || |||||||||||||||||||| |    
T  9171971 tctcctccttcaagcaaactgtggatccaatctggatacagaacttgaaaattttcttcattt---gtggttgtgtttgtattctttcttcctccaacaa 9171875  T
Q  115 tttccagcaacaacatgccgtagctgtatatatcagccttctaagagacattcccaaagtttcgagaaaaaacttcaggtgccatgtaccctaaagttcc 214  Q
    ||||||  | |||||| || ||||| |||||||||| ||| ||||||||||||||||| |||| |||||||||||| ||||||||||| ||||| |||||    
T  9171874 tttccaatagcaacataccatagctatatatatcagacttataagagacattcccaaaatttctagaaaaaacttcgggtgccatgtatcctaatgttcc 9171775  T
Q  215 cctggctgcggtcatcgatactatactttgatttttggagcacagcttagctaaaccgaagtc 277  Q
     |||||||| ||||| ||||   ||||||||||||| ||||||| |||||| |||||||||||    
T  9171774 tctggctgcagtcattgatatagtactttgattttttgagcacaacttagccaaaccgaagtc 9171712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0690 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: scaffold0690
Description:

Target: scaffold0690; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 36 - 271
Target Start/End: Complemental strand, 2053 - 1821
Alignment:
Q  36 tggatccaatctggatacagaacttggaaattttcttcaccaccagtagttgttttagtattctttcttcctccaaccatttccagcaacaacatgccgt 135  Q
    |||||||| |||||||||  |||||| |  ||||| |||||||   | |||||||| ||||||||||||||||||||||| |||| ||| ||||| ||||    
T  2053 tggatccagtctggatactcaacttgtatgttttcatcaccac---ttgttgttttcgtattctttcttcctccaaccatctccaacaataacataccgt 1957  T
Q  136 agctgtatatatcagccttctaagagacattcccaaagtttcgagaaaaaacttcaggtgccatgtaccctaaagttcccctggctgcggtcatcgatac 235  Q
    | ||||||||||| | ||| ||||||||||| ||||| |||| |||||||||||||||||||||||| ||||| |||||| | ||||  ||||| |||||    
T  1956 aactgtatatatcggacttataagagacatttccaaaatttctagaaaaaacttcaggtgccatgtagcctaatgttcccttagctgtagtcatggatac 1857  T
Q  236 tatactttgatttttggagcacagcttagctaaacc 271  Q
      ||||||||||||| || |||| |||||| |||||    
T  1856 attactttgatttttcgaacacatcttagccaaacc 1821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0690; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 36 - 130
Target Start/End: Complemental strand, 5052 - 4961
Alignment:
Q  36 tggatccaatctggatacagaacttggaaattttcttcaccaccagtagttgttttagtattctttcttcctccaaccatttccagcaacaacat 130  Q
    |||||||| |||||||||  |||||| | ||||||||||||||| ||  ||||||| ||||||||||||||||||||||| |||||||| |||||    
T  5052 tggatccagtctggatactcaacttgtatattttcttcaccacc-gt--ttgtttttgtattctttcttcctccaaccatctccagcaataacat 4961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 36 - 271
Target Start/End: Original strand, 15910053 - 15910285
Alignment:
Q  36 tggatccaatctggatacagaacttggaaattttcttcaccaccagtagttgttttagtattctttcttcctccaaccatttccagcaacaacatgccgt 135  Q
    |||||||| |||||||||  |||||| |  ||||| |||||||   | |||||||| ||||||||||||||||||||||| |||| ||| ||||| ||||    
T  15910053 tggatccagtctggatactcaacttgtatgttttcatcaccac---ttgttgtttttgtattctttcttcctccaaccatctccaacaataacataccgt 15910149  T
Q  136 agctgtatatatcagccttctaagagacattcccaaagtttcgagaaaaaacttcaggtgccatgtaccctaaagttcccctggctgcggtcatcgatac 235  Q
    | ||||||||||| | ||| ||||||||||| ||||| |||| |||||||||||||||||||||||| ||||| |||||| | ||| | ||||| |||||    
T  15910150 aactgtatatatcggacttataagagacatttccaaaatttctagaaaaaacttcaggtgccatgtagcctaatgttcccttagctacagtcatggatac 15910249  T
Q  236 tatactttgatttttggagcacagcttagctaaacc 271  Q
      ||||||||||||| || |||| |||||| |||||    
T  15910250 attactttgatttttcgaacacatcttagccaaacc 15910285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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