View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5792_low_1 (Length: 907)
Name: NF5792_low_1
Description: NF5792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5792_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 463; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 32 - 557
Target Start/End: Original strand, 23984284 - 23984807
Alignment:
| Q |
32 |
caaagtccaagatgagggaagacatggcctgtctaataaggccaaaactatatcaaataaaagagggatgacgtattcatagtcaaaaaagtctgccatg |
131 |
Q |
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| T |
23984284 |
caaagtccaagatgagggaagacatggcctgtctaatgaggccaaaactatatcaaataaaagagggatgacgtattcacagtcaaaaaagtctgccatg |
23984383 |
T |
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| Q |
132 |
ataactatactcataagatacttacttataaggttttgagttgtaaatataattttatttgcaa-ggggctgtgtagaccaaatcttcaattgatagata |
230 |
Q |
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| T |
23984384 |
ataactatactcataagatacttacttataaggttttgacttgtaaatataattttatttgcaaaggggctgtgtagaccaaatcttcaattgataga-- |
23984481 |
T |
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| Q |
231 |
gaggcataaaaaataa-ttaattcacaacaatttgcattattttatatcaatattattcaataagtaaactgaaagtgatcgatatgaaaacaacaagaa |
329 |
Q |
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| T |
23984482 |
--ggcataaaaaaaaaattaattcacaacaatttgcattattttatatcaatattattcaataagtaaactgaaagtgatcgatatgaaaacaacaagaa |
23984579 |
T |
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| Q |
330 |
ccacactacctattaacaccagaaatataggttcactttctcacaactatttaaagtataatcataagctatctgcttatttatcctacaagttggtcac |
429 |
Q |
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| T |
23984580 |
ccacactacctattaacaccataaatataggttcactttctcacaactattttaagtgtaatcataagctatctgcttatttatcctacaagttggtcac |
23984679 |
T |
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| Q |
430 |
ttaaagatgaatattttgttgtggcaaacatgggcttttgctctaattttatcttcatttatggcttctgctgctacagttgaacacactttcttggtaa |
529 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23984680 |
ttcaagatgaatattttgttgtggcaaacatgggcttttgctctaattttatcttcatttatggcttctgctgctacagttgaacacactttcttggtaa |
23984779 |
T |
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| Q |
530 |
gattttaatgtgcttagcttagtgttga |
557 |
Q |
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| T |
23984780 |
gattttaatgtgcttagcttagtgttga |
23984807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 585 - 893
Target Start/End: Original strand, 23984823 - 23985134
Alignment:
| Q |
585 |
gtattgactagtcttacttacatgacatttaattcaatcaatctttcactttaattcaattcttcacttagcttacccaatataactaattgcaatcatt |
684 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23984823 |
gtattgactagtcttacttacatgacatttaattcaatcaatctttcactttaactcaattcttcacttagcttacccaatataactaattgcaatcatt |
23984922 |
T |
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| Q |
685 |
tctcaaggtgtatactata--catgacataaatttttgcaaggtcggtctataagaaagtgagatttaaaataacattctatctcatataatgtaaaaat |
782 |
Q |
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|||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |||| |
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| T |
23984923 |
tctcaaggtgtatactattaccatgccataaagttttgcaaggtcggtctataagaaagtgagatttaaaataatattctatctcatatcatgtgaaaag |
23985022 |
T |
|
| Q |
783 |
ttagttttttactattgcaaagtggcacgtcgtatatggtcagggtttaatcctcgattcatctaaaaacattattgaaggttaaaagtaaa-gttattt |
881 |
Q |
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||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||||| |
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| T |
23985023 |
ttagttttttactgttggaaagtggcacgtcgtacgtggtcagggtttaatcctcgattcatctaaaaaaattattgaaggtcaaaagtaaatattattt |
23985122 |
T |
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| Q |
882 |
tacacaattact |
893 |
Q |
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|||||||||||| |
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| T |
23985123 |
tacacaattact |
23985134 |
T |
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