View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5792_low_14 (Length: 296)
Name: NF5792_low_14
Description: NF5792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5792_low_14 |
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| [»] scaffold0083 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 19 - 284
Target Start/End: Complemental strand, 11472821 - 11472556
Alignment:
| Q |
19 |
tactcagcttacacttactattattaggacaacattgcaatccccccttataatttggactcaatatttttccattttcatcctttttaacattatacaa |
118 |
Q |
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|||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
11472821 |
tactcaacttacacttactattatcaggacaacattgcaatccccccttataatttggactcaatatttttccattttcatcctttgtaacattatacaa |
11472722 |
T |
|
| Q |
119 |
gtcacacttacactcaatacaccccagtctatcttccacacccctagtatcaatagcatgaacattaattaaccatttttccacgtacccttttggaatt |
218 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11472721 |
atcacacttacactcaatacaccccattctatcttccacacccctggtatcaatagcatgaacattaattaaccatttttccacgtacccttttggaatt |
11472622 |
T |
|
| Q |
219 |
tcttcaggattaccaacttctatgccataagggttgggaatatatgcatgtgtgcctcttgtttca |
284 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||||| || |||||||||||||||| |
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| T |
11472621 |
tcttcaggattaccaacttctatgccataagggtcaggaatatatgtatttgtgcctcttgtttca |
11472556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 19 - 284
Target Start/End: Complemental strand, 11479213 - 11478948
Alignment:
| Q |
19 |
tactcagcttacacttactattattaggacaacattgcaatccccccttataatttggactcaatatttttccattttcatcctttttaacattatacaa |
118 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
11479213 |
tactcagcttacacttactattatcaggacaacattgcaatccccccttataatttggactcaatatttttccattttcatcctttgtaacattatacaa |
11479114 |
T |
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| Q |
119 |
gtcacacttacactcaatacaccccagtctatcttccacacccctagtatcaatagcatgaacattaattaaccatttttccacgtacccttttggaatt |
218 |
Q |
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||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |
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| T |
11479113 |
atcacacttacactcaatacaccccattctatcttctacacccctagtatcaatagcatgaacattaatcaaccatttttccacatacccttttggaatt |
11479014 |
T |
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| Q |
219 |
tcttcaggattaccaacttctatgccataagggttgggaatatatgcatgtgtgcctcttgtttca |
284 |
Q |
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|||||| |||||||||||||||| |||||||| | |||||||||| || |||||||||||||||| |
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| T |
11479013 |
tcttcatgattaccaacttctattccataaggttgaggaatatatgtatttgtgcctcttgtttca |
11478948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 19 - 284
Target Start/End: Complemental strand, 11485482 - 11485219
Alignment:
| Q |
19 |
tactcagcttacacttactattattaggacaacattgcaatccccccttataatttggactcaatatttttccattttcatcctttttaacattatacaa |
118 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||| || ||||||||||||||||| || |||||||||||||||| ||||| |||||| |
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| T |
11485482 |
tactcagcttacacttactattatcaggacaacattgcaatcctcctttataatttggactcaaagcttctccattttcatcctttgtaacaccatacaa |
11485383 |
T |
|
| Q |
119 |
gtcacacttacactcaatacaccccagtctatcttccacacccctagtatcaatagcatgaacattaattaaccatttttccacgtacccttttggaatt |
218 |
Q |
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||||||||||||||| ||||||||| ||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |
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| T |
11485382 |
atcacacttacactcagtacaccccattctatcttctacacc--tagtatcaatagcatgaacattaataaaccatttttccacatacccttttggaatt |
11485285 |
T |
|
| Q |
219 |
tcttcaggattaccaacttctatgccataagggttgggaatatatgcatgtgtgcctcttgtttca |
284 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||| || |||||||||||||||| |
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| T |
11485284 |
tcttcaggattaccaacttctatgccataagggtcaggaatatatgtatttgtgcctcttgtttca |
11485219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 106 - 284
Target Start/End: Complemental strand, 11462550 - 11462372
Alignment:
| Q |
106 |
taacattatacaagtcacacttacactcaatacaccccagtctatcttccacacccctagtatcaatagcatgaacattaattaaccatttttccacgta |
205 |
Q |
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|||||||||| | |||||| ||||||||||||||||||| | |||||||||||||||| |||||||| ||||| ||||| || | ||||||||| | || |
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| T |
11462550 |
taacattatataggtcacatttacactcaatacaccccattatatcttccacaccccttgtatcaattgcatggacattgatcatccatttttcatcata |
11462451 |
T |
|
| Q |
206 |
cccttttggaatttcttcaggattaccaacttctatgccataagggttgggaatatatgcatgtgtgcctcttgtttca |
284 |
Q |
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|||||| ||||||| | ||||||||||| ||||| |||||||||| |||||||||| || ||||||||| |||||| |
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| T |
11462450 |
ccctttaggaatttgtgaaggattaccaatttctactccataagggtcaggaatatatgtatctgtgcctctagtttca |
11462372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0083 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: scaffold0083
Description:
Target: scaffold0083; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 21 - 284
Target Start/End: Complemental strand, 47585 - 47322
Alignment:
| Q |
21 |
ctcagcttacacttactattattaggacaacattgcaatccccccttataatttggactcaatatttttccattttcatcctttttaacattatacaagt |
120 |
Q |
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|||||||| |||||| | |||| ||||||||||||||| ||||| ||||||||||||||||| | ||||||||||| || |||||||||| | || |
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| T |
47585 |
ctcagcttgcacttagtgttatcaggacaacattgcaaaccccctttataatttggactcaaagcatcaccattttcatctttagtaacattatataggt |
47486 |
T |
|
| Q |
121 |
cacacttacactcaatacaccccagtctatcttccacacccctagtatcaatagcatgaacattaattaaccatttttccacgtacccttttggaatttc |
220 |
Q |
| |
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|||| | || |||||||| |||| ||||||||||||||||| ||||||||| |||||| ||| || |||||||| || || || |||||||||||||| |
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| T |
47485 |
cacatctgcaatcaatacatcccatcctatcttccacaccccttgtatcaataacatgaatattcatcaaccatttctctacataaccttttggaatttc |
47386 |
T |
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| Q |
221 |
ttcaggattaccaacttctatgccataagggttgggaatatatgcatgtgtgcctcttgtttca |
284 |
Q |
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| ||||||||||||||||| |||||||||| |||||||||| || |||||||||||||||| |
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| T |
47385 |
agctggattaccaacttctataccataagggtctggaatatatgtatttgtgcctcttgtttca |
47322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 99; Significance: 7e-49; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 21 - 283
Target Start/End: Complemental strand, 21546916 - 21546654
Alignment:
| Q |
21 |
ctcagcttacacttactattattaggacaacattgcaatccccccttataatttggactcaatatttttccattttcatcctttttaacattatacaagt |
120 |
Q |
| |
|
|||| ||| ||||||||||||| ||| ||||||||||| ||||| ||||||||||||||||| || ||||||||||| ||| | ||||| || | || |
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| T |
21546916 |
ctcatcttgcacttactattatcagggcaacattgcaaaccccctttataatttggactcaaagcattaccattttcatcttttgtgacattgtataggt |
21546817 |
T |
|
| Q |
121 |
cacacttacactcaatacaccccagtctatcttccacacccctagtatcaatagcatgaacattaattaaccatttttccacgtacccttttggaatttc |
220 |
Q |
| |
|
|||| ||||||||||| |||| | || ||||||||||| |||||||| ||||||||||| || |||||||| ||||| ||||||||||||||||| |
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| T |
21546816 |
cacatgagcactcaatacatcccacccggtcatccacacccctcgtatcaattgcatgaacattgatcaaccatttctccacatacccttttggaatttc |
21546717 |
T |
|
| Q |
221 |
ttcaggattaccaacttctatgccataagggttgggaatatatgcatgtgtgcctcttgtttc |
283 |
Q |
| |
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||||||||||||||||||| |||||||||| |||||||||| || ||||| ||||||||| |
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| T |
21546716 |
agcaggattaccaacttctataccataagggtctggaatatatgtatttgtgcttcttgtttc |
21546654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 165 - 232
Target Start/End: Original strand, 38227202 - 38227269
Alignment:
| Q |
165 |
gtatcaatagcatgaacattaattaaccatttttccacgtacccttttggaatttcttcaggattacc |
232 |
Q |
| |
|
|||||||| ||||||||||||| |||||||| ||| | |||||| |||||| |||||||||||||| |
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|
| T |
38227202 |
gtatcaatggcatgaacattaagcaaccatttatcctcaaacccttgtggaatctcttcaggattacc |
38227269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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