View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5792_low_15 (Length: 215)
Name: NF5792_low_15
Description: NF5792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5792_low_15 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 174; Significance: 8e-94; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 11 - 192
Target Start/End: Complemental strand, 49516010 - 49515829
Alignment:
| Q |
11 |
gaagaaaatgcattataaaagaaagtgtgatgatgaattagcaagtgtgatggttttaatgatatctgtcaaaaatgcctgtaaatttggatggttcctt |
110 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49516010 |
gaagaagatgcattataaaagaaagtgtgatgatgaattagcaagtgtgatggttttaatgatatctgtcaaaaatgcctgtaaatttggatggttcctt |
49515911 |
T |
|
| Q |
111 |
aacaaattagagtcagaagaacttttaactattgctcgtgagataggaaagatctattgtacattcagaaacgtgataagta |
192 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49515910 |
aacaaattagagtcagaagaacttttaactattgctcctgagataggaaagatctattgtacattcagaaacgtgataagta |
49515829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 22 - 164
Target Start/End: Original strand, 49516404 - 49516545
Alignment:
| Q |
22 |
attataaaagaaagtgtgatgatgaattagcaagtgtgatggttttaatgatatctgtcaaaaatgcctgtaaatttggatggttccttaacaaattaga |
121 |
Q |
| |
|
||||| |||||||||| ||||||||| || || ||| ||| ||||| |||||||| |||| ||||||| |||||| ||| |||| |||| ||||||||| |
|
|
| T |
49516404 |
attatcaaagaaagtgggatgatgaactatcaggtgcaatgattttagtgatatctttcaagaatgcctttaaatt-ggacggtttcttatcaaattaga |
49516502 |
T |
|
| Q |
122 |
gtcagaagaacttttaactattgctcgtgagataggaaagatc |
164 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
49516503 |
gtcaaaagtacttttaactattgctcgtgagataggaaagatc |
49516545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 163
Target Start/End: Complemental strand, 22990833 - 22990710
Alignment:
| Q |
37 |
gtgatgatgaattagcaagtgtgatggttttaatgatatctgtcaaaaatgcctgtaaatttggatggttccttaacaaattagagtcagaagaactttt |
136 |
Q |
| |
|
||||||||||| ||| | |||||| ||||| ||||| |||| || ||||||||| |||||||||||||| ||||| |||| || |||||||| | |
|
|
| T |
22990833 |
gtgatgatgaactaggagttgtgatagttttggtgataactgtgaagaatgcctgtgaatttggatggttcgagaacaa---agagacacaagaacttct |
22990737 |
T |
|
| Q |
137 |
aactattgctcgtgagataggaaagat |
163 |
Q |
| |
|
||||||||||| ||||||| |||||| |
|
|
| T |
22990736 |
aactattgctcacgagatagaaaagat |
22990710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University