View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5792_low_3 (Length: 563)
Name: NF5792_low_3
Description: NF5792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5792_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 509; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 1 - 550
Target Start/End: Original strand, 33531357 - 33531906
Alignment:
| Q |
1 |
tctttattgcagttcaatgccttttctgcttctcccaacctgcattaaaattttcaattctatnnnnnnncaataacacaaaaagaaacacaaccattaa |
100 |
Q |
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| T |
33531357 |
tctttattgcagttcaatgccttttctgcttctcccaacctgcattaaaattttcaattctataaaaaaacaataacacaaaaacaaacacaaccattaa |
33531456 |
T |
|
| Q |
101 |
tataactaagtgattgagctcaagtaatagtgggttttatttaattacaaattgattgggagttcccgagtttgaaccccgattgaaacaacttttggtc |
200 |
Q |
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| T |
33531457 |
tataactaagtgattgagcccaagtaatagtgggttttatttaattacaaattgattgggagttcccgagtttgaaccccgattgaaataacttttggtc |
33531556 |
T |
|
| Q |
201 |
caacttaacttatctcccatccgaactccagattaccagggtcacttcccctcttaattcagaggattaagacaggtatactatttaattgagtgaagca |
300 |
Q |
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| T |
33531557 |
cgacttaacttatctcccatccgaactccagattaccagggtcacttcccctcttaattcagaggattaagaaaggtatactatttaattgagtgaagca |
33531656 |
T |
|
| Q |
301 |
tattaagttattcatcattaacaagtacctgaagtatattgtcgccaaacggctatgagctctaggataagaagggtcaatcctaatagcttcctcacac |
400 |
Q |
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| T |
33531657 |
tattaagttattcatcattaacaagtacctgaagtatattgtcgccaaacggctatgagctctaggataagaagggtcaatcctaatagcttcctcacac |
33531756 |
T |
|
| Q |
401 |
tcaacaattgcatgctgaaaccttcccaaaccaatcaaagcagcactcttgttacaatgataagttgccttattggaatcaatagcaatagctcgttcat |
500 |
Q |
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| T |
33531757 |
tcaacaattgcatgctgaaaccttcccaaaccaatcaaagcagcactcttgttacaatgataagttgccttattggaatcaatagcaatagctcgttcat |
33531856 |
T |
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| Q |
501 |
acaaagccaaagcctcagaaaatcttccttgtttgtatgcttcatttccc |
550 |
Q |
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| T |
33531857 |
acaaagccaaagcctcagaaaatcttccttgtttgtatgcttcatttccc |
33531906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 90; Significance: 3e-43; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 325 - 550
Target Start/End: Original strand, 26209619 - 26209844
Alignment:
| Q |
325 |
gtacctgaagtatattgtcgccaaacggctatgagctctaggataagaagggtcaatcctaatagcttcctcacactcaacaattgcatgctgaaacctt |
424 |
Q |
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||||||||| |||||||| |||||||| | |||||||| ||||||||| || | || ||||| |||||||||||||| |||||| | ||||||||| |
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| T |
26209619 |
gtacctgaaatatattgttgccaaacgattgtgagctctgttataagaaggatccaaccgaatagattcctcacactcaataattgcttcttgaaacctt |
26209718 |
T |
|
| Q |
425 |
cccaaaccaatcaaagcagcactcttgttacaatgataagttgccttattggaatcaatagcaatagctcgttcatacaaagccaaagcctcagaaaatc |
524 |
Q |
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|| || |||||||||||||||||||| || |||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||||| ||| |
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| T |
26209719 |
cctaatccaatcaaagcagcactcttattgcaatgataagttgccttatttgaatcaatagcaattgctttgtcatacaaagccaaagcctcttcaaact |
26209818 |
T |
|
| Q |
525 |
ttccttgtttgtatgcttcatttccc |
550 |
Q |
| |
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| || | ||||||||||||||||||| |
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| T |
26209819 |
taccctttttgtatgcttcatttccc |
26209844 |
T |
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Back To:
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