View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5792_low_7 (Length: 447)
Name: NF5792_low_7
Description: NF5792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5792_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 410; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 9 - 434
Target Start/End: Original strand, 21536580 - 21537005
Alignment:
| Q |
9 |
agcacagaacatctttgatgctttatctaaaacgcttccagtctgctgggacaagactgtcatagttgtaatgaatgaggtgcgtatcagcagtccttat |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21536580 |
agcacagaacatctttgatgctttatctaaaacgcttccagtccgctgggacaagactgtcatagttgtaatgaatgaggtgcgtatcagcagtccttat |
21536679 |
T |
|
| Q |
109 |
cacccggattgtgtgattggcggtgctcctgctgccaatgaccgggtgaagaaagtgcttgagatgttgaggaagcgtttgcaacttccctgttctggtg |
208 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21536680 |
cacccggattgtgtgaatggcggtgctcctgctgccaatgaccgggtgaagaaagtgcttgagatgttgaggaagcgtttgcaacttccctgttctggtg |
21536779 |
T |
|
| Q |
209 |
gtcagtagagttacaaaatgatcatttgaggtattgagctctcaggttctgtttttcttttggagttcatttgaggtatttccctcaaatacatcttaat |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21536780 |
gtcagtagagttacaaaatgatcatttgaggtattgagctctcaggttctgtttttcttttggagttcatttgaggtatttccctcaaatacatcttaat |
21536879 |
T |
|
| Q |
309 |
agtgtattttttggagttggattttggagggaaaactttagaggactatgtttatatttaatatacctgttatttttaaaaacaaattgaaagaacaaaa |
408 |
Q |
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|||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21536880 |
agtgtactttttggagttggattttgtagggaaaactttagaggactatgtttatatttaatatacctgttatttttaaaaacaaattgaaagaacaaaa |
21536979 |
T |
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| Q |
409 |
tataaatgatcatataatacttcaat |
434 |
Q |
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|||||||||||||||||||||||||| |
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| T |
21536980 |
tataaatgatcatataatacttcaat |
21537005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 42 - 165
Target Start/End: Complemental strand, 26480310 - 26480187
Alignment:
| Q |
42 |
gcttccagtctgctgggacaagactgtcatagttgtaatgaatgaggtgcgtatcagcagtccttatcacccggattgtgtgattggcggtgctcctgct |
141 |
Q |
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|||||||||| ||||||||||||| |||||||| || |||||||||||||| ||||||||||||||||| | || ||||||||||| ||| |||||||| |
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| T |
26480310 |
gcttccagtccgctgggacaagaccgtcatagtcgtgatgaatgaggtgcgcgtcagcagtccttatcactctgaatgtgtgattggtggtactcctgct |
26480211 |
T |
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| Q |
142 |
gccaatgaccgggtgaagaaagtg |
165 |
Q |
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| T |
26480210 |
gcaaatgaccgggtgaagaaagtg |
26480187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 393 - 435
Target Start/End: Complemental strand, 34552711 - 34552668
Alignment:
| Q |
393 |
aattgaaagaacaaaat-ataaatgatcatataatacttcaatt |
435 |
Q |
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| T |
34552711 |
aattgaaagaacaaaatgataaatgatcatataatacttcaatt |
34552668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 42
Target Start/End: Complemental strand, 26482404 - 26482371
Alignment:
| Q |
9 |
agcacagaacatctttgatgctttatctaaaacg |
42 |
Q |
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||||||||||||||||||||| |||||||||||| |
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| T |
26482404 |
agcacagaacatctttgatgcattatctaaaacg |
26482371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 395 - 434
Target Start/End: Complemental strand, 27487138 - 27487098
Alignment:
| Q |
395 |
ttgaaagaacaaaat-ataaatgatcatataatacttcaat |
434 |
Q |
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|||||||||||| || ||||||||||||||||||||||||| |
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| T |
27487138 |
ttgaaagaacaacatgataaatgatcatataatacttcaat |
27487098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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