View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5793_high_1 (Length: 696)
Name: NF5793_high_1
Description: NF5793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5793_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 528; Significance: 0; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 9 - 678
Target Start/End: Original strand, 3685958 - 3686640
Alignment:
| Q |
9 |
tcgaagaatatagatcacgaacgcatcgcgaactgatgtggcagtaagtgattggttcttataacacatacacactgtgatttccgctcattcatgaact |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
3685958 |
tcgaagaatatagatcacgaacgcatcgcgaactgatgtggcagtaagtgattggttcttttaacacatacacactgtgatttccgctcattcatgaact |
3686057 |
T |
|
| Q |
109 |
atacacaacttcttcctttataattaccacacgtatcgattcgggaagatcgttatgaggtgtgttcttgataaatagcagtactagaaataaaatatga |
208 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
3686058 |
atacacaacttcttcctttataattaccacacgtatcgattcgggaagatcgttatgaggtgtgttcttgataaatagcagtactagaaaaaaaatatga |
3686157 |
T |
|
| Q |
209 |
cagttatgttagggagaaaagaaaaaagaaagtggttacttgctagttgctgagtggttttgtgagggagtgaccaagctctagatatcgtcatttctgc |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
3686158 |
cagttatgttagggagaaaagaaaaaagaaagtggttacttgctagttgccgagtggttttgtgagggagggaccaagctctagatatcgtcatttctgc |
3686257 |
T |
|
| Q |
309 |
taaggcatctagatatggaatttgtttgaagtaacttctaactaagacatgaaacgatgataataataagatagacatgaaac-gatg------atatat |
401 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | | | |
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| T |
3686258 |
caaggcatcaagatatggaatttgtttgaagtaacttctaactaagacatgaaacgatgataataataagatagacatgaaacagatgtaatgaacaaaa |
3686357 |
T |
|
| Q |
402 |
ggcataaaccatatatagtactaacatagtaagaacaatttagaaaacaaaagcacaagatccctttcaaatgatgatacaatgaagaagaa------gn |
495 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
3686358 |
ggcataaaccatatataatactaacatagtaagaacaatttagaaaacaaaagcacaagatccctttcaaatgatgatacaatgaaaaagaaaaaaagaa |
3686457 |
T |
|
| Q |
496 |
nnnnnnnnnnnnnncaactttgttttacgatcttgctatcccccttcatccaattccttcaaattccacttcgttgtttggagaaatacgaccttcatcc |
595 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
3686458 |
aaaaaaaggaaaaacaactttgttttacgatcttgctatcccccttcatccaattccttcaaattccacttcgctgtttggagaaatacgaccttcatcc |
3686557 |
T |
|
| Q |
596 |
aaatgcaaaatagggcatgtccggatttcactatgtcggatgatcctgagtatttaaacttgttttggccacctcctgattca |
678 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
3686558 |
aaatgcaaaatagggcatgtccggatttcactatgtcggatgatcatgagtatttaaacttgttttggccacctcctgattca |
3686640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 133; E-Value: 8e-69
Query Start/End: Original strand, 10 - 209
Target Start/End: Original strand, 3693725 - 3693925
Alignment:
| Q |
10 |
cgaagaatatagatcacgaacgcatcgcgaactgatgtggcagtaagtgattggtt-cttataacacatacacactgtgatttccgctcattcatgaact |
108 |
Q |
| |
|
|||||||||| ||||| |||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
3693725 |
cgaagaatattgatcaataacgcatcacgaactgatttggcagtaagtgattggtttcttataacacatacacactgtgatttccgctcattcctgaacc |
3693824 |
T |
|
| Q |
109 |
atacacaacttcttcctttataattaccacacgtatcgattcgggaagatcgttatgaggtgtgttcttgataaatagcagtactagaaataaaatatga |
208 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||| |||||||| | |||||||||||||||||||||| |
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|
| T |
3693825 |
atacactgcttcttcctttataattacaacacgtatcgattcgggaagatcatgatgaggtgtgtttttgataaacaacagtactagaaataaaatatga |
3693924 |
T |
|
| Q |
209 |
c |
209 |
Q |
| |
|
| |
|
|
| T |
3693925 |
c |
3693925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 28 - 216
Target Start/End: Original strand, 3679213 - 3679409
Alignment:
| Q |
28 |
aacgcatcgcgaactgatgtggcagtaagtgattggtt-cttataacacatacacactgtgatttccgctcattcatgaactatacacaacttcttcctt |
126 |
Q |
| |
|
|||||||| |||| |||| |||||| |||||||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||| ||| |
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|
| T |
3679213 |
aacgcatcacgaattgatttggcagcaagtgattggtttcttataacacatacacgctgtgatttccgctcattcctgaactatacactacttctt-ctt |
3679311 |
T |
|
| Q |
127 |
tataattaccac----ac---gtatcgattcgggaagatcgttatgaggtgtgttcttgataaatagcagtactagaaat-aaaatatgacagttatg |
216 |
Q |
| |
|
|||||||| || || ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
3679312 |
aataattacaacgtgtacggtgtatcgattcgggaagatcgtgatgaggcatgttcttgataaatagcagtactagaaatgaaaatatgacagttatg |
3679409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 10 - 204
Target Start/End: Original strand, 3675532 - 3675716
Alignment:
| Q |
10 |
cgaagaatatagatcacgaacgcatcgcgaactgatgtggcagtaagtgattggttcttataacacatacacactgtgatttccgctcattcatgaacta |
109 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||||||||| ||||| |||||||| ||| |||| |||||||||||||| |||||| |
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|
| T |
3675532 |
cgaagaatatagatcacgaacgcatcacaaactgatgtggttataagt----------tataacacttacgtgctgtcatttccgctcattccagaacta |
3675621 |
T |
|
| Q |
110 |
tacacaacttcttcctttataattaccacacgtatcgattcgggaagatcgttatgaggtgtgttcttgataaatagcagtactagaaataaaat |
204 |
Q |
| |
|
||||| ||||||||||||||||||| ||||| ||||||||||||||||| | |||| |||||||||||||||||| ||||||||||||||||| |
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|
| T |
3675622 |
tacactgcttcttcctttataattacaacacgaatcgattcgggaagatcatggtgagatgtgttcttgataaatagtagtactagaaataaaat |
3675716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 300 - 391
Target Start/End: Original strand, 3703297 - 3703388
Alignment:
| Q |
300 |
catttctgctaaggcatctagatatggaatttgtttgaagtaacttctaactaagacatgaaacgatgataataataagatagacatgaaac |
391 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||| |||||||| |||||||||| |||||||| |
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|
| T |
3703297 |
catttttgctaaggcatctagatatggaatttatttgaagtagcttgtaactaagacatgaaatgatgataacaataagataggcatgaaac |
3703388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 310 - 375
Target Start/End: Original strand, 3675811 - 3675877
Alignment:
| Q |
310 |
aaggcatctagatatggaatttgtttgaagtaa-cttctaactaagacatgaaacgatgataataat |
375 |
Q |
| |
|
||||||||| |||||||||||| |||||||||| |||||||||||||||||||| ||||| |||||| |
|
|
| T |
3675811 |
aaggcatcttgatatggaatttatttgaagtaagcttctaactaagacatgaaatgatgacaataat |
3675877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 405 - 479
Target Start/End: Complemental strand, 3687100 - 3687028
Alignment:
| Q |
405 |
ataaaccatatatagtactaacatagtaagaacaattt-agaaaacaaaagcacaagatccctttcaaatgatgat |
479 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| | |||| ||||||||| |||||||||||||||||||| |
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|
| T |
3687100 |
ataaaccatatata---ctaacatagtaagaacaattttaaaaaagaaaagcacatgatccctttcaaatgatgat |
3687028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 627 - 674
Target Start/End: Complemental strand, 3650747 - 3650700
Alignment:
| Q |
627 |
tatgtcggatgatcctgagtatttaaacttgttttggccacctcctga |
674 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
3650747 |
tatgtcggatgatcctgagtatttaaacttgttatggcctcctcctga |
3650700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 627 - 664
Target Start/End: Original strand, 3706790 - 3706827
Alignment:
| Q |
627 |
tatgtcggatgatcctgagtatttaaacttgttttggc |
664 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
3706790 |
tatgtcggatgatcctgagtatttaaacttgttctggc |
3706827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 222 - 290
Target Start/End: Original strand, 34676634 - 34676702
Alignment:
| Q |
222 |
gagaaaagaaaaaagaaagtggttacttgctagttgctgagtggttttgtgagggagtgaccaagctct |
290 |
Q |
| |
|
|||||||||||| ||||||||||| | | ||||| ||||||||| |||||||||| ||| ||||||| |
|
|
| T |
34676634 |
gagaaaagaaaagggaaagtggttattgggtagttcttgagtggttatgtgagggagagacaaagctct |
34676702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 421 - 480
Target Start/End: Original strand, 41979687 - 41979749
Alignment:
| Q |
421 |
actaacatagtaagaacaatttagaaaacaaaagcacaagatccct---ttcaaatgatgata |
480 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||| ||||||| |||||||||||||| |
|
|
| T |
41979687 |
actaacatagtaagaacaatttaataaacaaatgcacctgatcccttcattcaaatgatgata |
41979749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 424 - 476
Target Start/End: Original strand, 4432410 - 4432462
Alignment:
| Q |
424 |
aacatagtaagaacaatttagaaaacaaaagcacaagatccctttcaaatgat |
476 |
Q |
| |
|
|||||||||||||||||||||||| | || |||| |||||| |||||||||| |
|
|
| T |
4432410 |
aacatagtaagaacaatttagaaagccaattcacatgatccccttcaaatgat |
4432462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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