View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5793_high_2 (Length: 587)
Name: NF5793_high_2
Description: NF5793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5793_high_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-134; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 133 - 569
Target Start/End: Complemental strand, 19922398 - 19921950
Alignment:
| Q |
133 |
atattaaaagatattttatattttgaacgcattcaatatagtcgttgaaaatcatatattcaacgggtcaaaatactttgaatagagactacacgatatt |
232 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||||| ||| ||| ||||||||||||||||| |||||||||||||||| |||||||||| |||| |
|
|
| T |
19922398 |
atattaaaagaaattttatagtttgaacgcattcaatatggtctttgtaaatcatatattcaacgcatcaaaatactttgaatcaagactacacgctatt |
19922299 |
T |
|
| Q |
233 |
aattttaaataaactttcaatatttttaataaataaatttatgacgttcaaatctacaagaatcgatttaaatccaacgatcatcaacatagtaaatatg |
332 |
Q |
| |
|
||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||| ||| | ||||||||||| |
|
|
| T |
19922298 |
aattttagataaactttcaatttttttaataaataaatttatgaagttcaaatctacacaaatcgatttcaatccaacgattatcggcgtagtaaatatg |
19922199 |
T |
|
| Q |
333 |
tgaaagcatttaagatgaccatgaaatggactaaaatcaatgtttct----------atacattactaaccgttgtga---cannnnnnnnnnacctttt |
419 |
Q |
| |
|
|||| ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||| |
|
|
| T |
19922198 |
tgaacgcatttaagatga-catgaaatggactaaaatcaatgtttctatacattttcatacattactaaccgttgtgaaattaatcattttttacctttt |
19922100 |
T |
|
| Q |
420 |
accttccttataaatatgatctgtatttttcttgactagagcctatactatactttacctctcttcttgaactctagaccctgtcattgtactttgcaac |
519 |
Q |
| |
|
|||||||||| |||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19922099 |
accttccttacaaatatgacctgtacttttcttgactagagcctatactctactttacctctcttcttgaactctagaccctgtcattgtactttgcaac |
19922000 |
T |
|
| Q |
520 |
tttgaaccatttcactcactgcttctgtttcaaatggaagatagcaacag |
569 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||| |||||||||||| |
|
|
| T |
19921999 |
tttgaaccatttcactctctgcttatgtttcaaatgttagatagcaacag |
19921950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 101 - 569
Target Start/End: Original strand, 19922404 - 19922894
Alignment:
| Q |
101 |
tgttctcttaccccaaaggtactcttgcat------aaatattaaaagatattttatattttgaacgcattcaatatagtcgttgaaaatcatatattca |
194 |
Q |
| |
|
||||| ||||||||||||||| |||||||| |||||||||||||||||||||| ||||| |||||| |||| ||||||| |||||||||||||| |
|
|
| T |
19922404 |
tgttcccttaccccaaaggtattcttgcattaccctaaatattaaaagatattttatagtttga-cgcatttaatacggtcgttgcaaatcatatattca |
19922502 |
T |
|
| Q |
195 |
acgggtcaaaatactttgaatagagactacacgatattaattttaaataaactttcaatatttttaataaataaatttatgacgttcaaatctacaagaa |
294 |
Q |
| |
|
||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
19922503 |
acgcgtcaaaatactttgaatcaagactacacgatattaattttaaataaactttcaatttttttaataaataaatttatgacgttcaaatctacacgaa |
19922602 |
T |
|
| Q |
295 |
tcgatttaaatccaacgatcatcaacatagtaaatatgtgaaagcatttaag------atgaccatgaaatggactaaaatcaatgtttct--------a |
380 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||||||| ||||||| ||||| |||||| ||||||||| ||||||| | | |
|
|
| T |
19922603 |
tcgatttctatccaacgatcatcggcatagtaaatatgtgaacatatttaagatttaaatgacattgaaattgactaaaataaatgtttatacattttca |
19922702 |
T |
|
| Q |
381 |
tacattactaaccgttgtga---cannnnnnnnnnaccttttaccttccttataaatatgatctgtatttttcttgactagagcctatactatactttac |
477 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||||||| |||||||| |||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
19922703 |
tacattactaaccgttgtgaaattaatcattttttaccttttaccttccttacaaatatgacatgtacttttcttgactagagcctatactctactttac |
19922802 |
T |
|
| Q |
478 |
ctctcttcttgaactctagaccctgtcattgtactttgcaactttgaaccatttcactcactgcttctgtttcaaatggaagatagcaacag |
569 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
19922803 |
ctctcttcttgaactctagaccctgtcattgtactttgcaactttgaaccatttcactctctgcttctgtttcaaatggaagatagcaacag |
19922894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 81; Significance: 8e-38; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 232 - 565
Target Start/End: Original strand, 6389748 - 6390085
Alignment:
| Q |
232 |
taattttaaataaactttcaatatttttaataaataaatttatgacgttcaaatctacaagaatcgatttaaatccaacgatcatcaacatagtaaatat |
331 |
Q |
| |
|
||||||| |||||||||||||| |||| ||||||| |||||| ||| ||||||||||| |||||||||| ||||||| ||||| | | ||||||||| | |
|
|
| T |
6389748 |
taattttgaataaactttcaattttttcaataaattaatttacgacattcaaatctacgcgaatcgatttcaatccaaagatca-cgatatagtaaatgt |
6389846 |
T |
|
| Q |
332 |
gtgaaagcatttaagatgaccatgaaatggactaaaatcaatgtttctataca----------ttactaaccgttgtga---cannnnnnnnnnaccttt |
418 |
Q |
| |
|
||||| | ||||||||||| ||||||| |||||||||||||||| |||||| || ||||||||||||| | |||||| |
|
|
| T |
6389847 |
gtgaacgtatttaagatgagtatgaaatatactaaaatcaatgtttttatacattttcttactttcctaaccgttgtgaaattaatcattttttaccttt |
6389946 |
T |
|
| Q |
419 |
taccttccttataaatatgatctgtatttttcttgactagagcctatactatactttacctctcttcttgaactctagaccctgtca----ttgtacttt |
514 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||||| || |||||||| |||||||||||| ||||||||||||| |||||||| |
|
|
| T |
6389947 |
taccttccttataaatatgacatgt----------actagagcctatgctgtactttacgtctcttcttgaa--ctagaccctgtcactctctgtacttt |
6390034 |
T |
|
| Q |
515 |
gcaactttgaaccatttcactcactgcttctgtttcaaatggaagatagca |
565 |
Q |
| |
|
||| |||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
6390035 |
gcacctttgaaccatttcactctctgcttctgtttcaaatggaagatagca |
6390085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 130 - 384
Target Start/End: Original strand, 6389003 - 6389258
Alignment:
| Q |
130 |
taaatattaaaagatattttatattttgaacgcattcaatatagtcgttgaaaatcatatattcaacgggtcaaaatactttgaatagagactacacgat |
229 |
Q |
| |
|
|||| |||||||||||||||||| ||| ||||||||||||| |||||||||||| || ||||||||| ||||||||| |||||| |||||||| | | |
|
|
| T |
6389003 |
taaacattaaaagatattttatagttttaacgcattcaatacggtcgttgaaaataatgtattcaacgcgtcaaaatatgttgaatcaagactacatgtt |
6389102 |
T |
|
| Q |
230 |
attaattttaaataaacttt---caatatttttaataaataaatttatgacgttcaaatctacaagaatcgatttaaatccaacgatcatcaacatagta |
326 |
Q |
| |
|
||| ||||||||||| ||| | |||||||||| ||||||| || || |||||||| ||||||||| |||||||| |||| | ||| ||| |
|
|
| T |
6389103 |
gttagttttaaataaattttttggtttttttttaataactaaatttccgattttaaaatctacgctaatcgatttcaatccaacaatcaccgacacggta |
6389202 |
T |
|
| Q |
327 |
aatatgtgaaagcatttaagatgaccatgaaatggactaaaatcaatgtttctataca |
384 |
Q |
| |
|
| | |||||| ||||||||||| || | ||||||||||||||||| ||||||| |||| |
|
|
| T |
6389203 |
agtgtgtgaatgcatttaagat-acta-gaaatggactaaaatcactgtttctttaca |
6389258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 138 - 211
Target Start/End: Original strand, 6389431 - 6389503
Alignment:
| Q |
138 |
aaaagatattttatattttgaacgcattcaatatagtcgttgaaaatcatatattcaacgggtcaaaatacttt |
211 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| || |||| |||| || ||||||||| ||||||||||||| |
|
|
| T |
6389431 |
aaaagatattttatagtttgaacgcattcaatatggttgttgcaaat-atgtattcaacgcgtcaaaatacttt |
6389503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 146 - 211
Target Start/End: Original strand, 6389501 - 6389565
Alignment:
| Q |
146 |
ttttatattttgaacgcattcaatatagtcgttgaaaatcatatattcaacgggtcaaaatacttt |
211 |
Q |
| |
|
||||||| ||||||| |||||||||| ||||||| |||| || ||||||||| ||||||||||||| |
|
|
| T |
6389501 |
ttttatagtttgaacacattcaatatggtcgttgcaaat-atgtattcaacgcgtcaaaatacttt |
6389565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 146 - 211
Target Start/End: Original strand, 6389625 - 6389689
Alignment:
| Q |
146 |
ttttatattttgaacgcattcaatatagtcgttgaaaatcatatattcaacgggtcaaaatacttt |
211 |
Q |
| |
|
||||||| |||||| |||||||||| |||||||| |||| || ||||||||| ||||||||||||| |
|
|
| T |
6389625 |
ttttatagtttgaatgcattcaatacagtcgttgcaaat-atgtattcaacgcgtcaaaatacttt |
6389689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 513 - 560
Target Start/End: Original strand, 6403282 - 6403330
Alignment:
| Q |
513 |
ttgcaactttgaaccatttc-actcactgcttctgtttcaaatggaaga |
560 |
Q |
| |
|
|||||||||||||||||||| |||| | ||||||||||||||||||||| |
|
|
| T |
6403282 |
ttgcaactttgaaccatttccactctccgcttctgtttcaaatggaaga |
6403330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 204
Target Start/End: Original strand, 6389687 - 6389745
Alignment:
| Q |
146 |
ttttatattttgaacgcattcaatatagtcgttgaaaatcatatattcaacgggtcaaa |
204 |
Q |
| |
|
||||||| ||||||||||||||||| || |||| ||||||| ||||||||| |||||| |
|
|
| T |
6389687 |
ttttatagtttgaacgcattcaatacggttgttgcaaatcatgtattcaacgcgtcaaa |
6389745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University