View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5794-Insertion-10 (Length: 181)
Name: NF5794-Insertion-10
Description: NF5794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5794-Insertion-10 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 4e-89; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 4e-89
Query Start/End: Original strand, 8 - 181
Target Start/End: Original strand, 21243002 - 21243175
Alignment:
| Q |
8 |
ctaaggagaggaagtaccgtggtttcgatggggaggtttgagttagagggttttttgaaggtgattgagaagtataaagtgacgaacttgtgggttgtgc |
107 |
Q |
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| T |
21243002 |
ctaaggagaggaagtaccgtggtttcgatggggaggtttgagttagagggttttttgaaggtgattgagaagtataaagtgacgaacttgtgggttgtgc |
21243101 |
T |
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| Q |
108 |
caccgatgattcttgctttagcgaaacaaagtgtggttgggaaatatgatgtttcttctctgaagagtattggg |
181 |
Q |
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| T |
21243102 |
caccgatgattcttgctttagcgaaacagagtgtggttgggaaatatgatgtttcttctttgaagagtattggg |
21243175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 8 - 180
Target Start/End: Original strand, 21258768 - 21258939
Alignment:
| Q |
8 |
ctaaggagaggaagtaccgtggtttcgatggggaggtttgagttagagggttttttgaaggtgattgagaagtataaagtgacgaacttgtgggttgtgc |
107 |
Q |
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| T |
21258768 |
ctaaggagaggaagtgcggtggtttcaacggggagatttgagttagagggtttt-tgaaggtgattgaaaagtatagagtgacaactttgtgggttgtgc |
21258866 |
T |
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| Q |
108 |
caccgatgattcttgctttagcgaaacaaagtgtggttgggaaatatgatgtttcttctctgaagagtattgg |
180 |
Q |
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| T |
21258867 |
catcgatgaatcttgctttggcgaaacagagtgtggttgggaaatatgatgtttcttcgttgaagagtattgg |
21258939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 8 - 101
Target Start/End: Original strand, 21254265 - 21254357
Alignment:
| Q |
8 |
ctaaggagaggaagtaccgtggtttcgatggggaggtttgagttagagggttttttgaaggtgattgagaagtataaagtgacgaacttgtggg |
101 |
Q |
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| T |
21254265 |
ctaaggagaggaagtacggtggtttcaacggggaggtttgagttagaggg-tttttgaaggtgattgagaagcatagagtgacgaatttgtggg |
21254357 |
T |
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