View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5794-Insertion-2 (Length: 1003)
Name: NF5794-Insertion-2
Description: NF5794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5794-Insertion-2 |
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Alignment Details
Target: chr1 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 102 - 461
Target Start/End: Original strand, 4341261 - 4341620
Alignment:
| Q |
102 |
aaaagttggctatcgagggaaaagaatcaaaccacttaaatatcccaccgagcatcttattctacgtgggacttaaggaccctatagtagggccacccct |
201 |
Q |
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| T |
4341261 |
aaaagttggctatcgagggaaaagaatcaaaccacttaaatatcccaccgagcatcttattctacgtgggacttaaggaccctatagtagggccacccct |
4341360 |
T |
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| Q |
202 |
tagaccgacgtctctacaaccccgttgtatgatgttttactcgaccttttcggtcaggctgtagtgtaggtagttctttctaagccaccgacaaataact |
301 |
Q |
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| T |
4341361 |
tagaccgacgtctctacaaccccgttgcatgatgttttactcgaccttttcggtcaagctgtagtgtaggtagttctttctaagccaccgacaaataact |
4341460 |
T |
|
| Q |
302 |
ctaacaccaattgacaaatatttaacaacttgttgaattctcattaaaaagttagatatcctctaacatccaaatctctattatatatctattattttaa |
401 |
Q |
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| T |
4341461 |
ctaacaccaattgacaaatatttaacaacttgttgaattctcattaaaaagttaggtatcctctaacatccaaatctctattatatatctattattttaa |
4341560 |
T |
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| Q |
402 |
attattatcggtgttaacgtgtgtcagggtccatgtatgcgtcactctttcatattacat |
461 |
Q |
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| T |
4341561 |
attattaccggtgttaacgtgtgtcagggtccgtgtatgcgtcactctttcatattacat |
4341620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 462 - 802
Target Start/End: Original strand, 4347140 - 4347495
Alignment:
| Q |
462 |
gctttgtcaaatggcttttcacgatgagaaagagtaagtttattccacttctcttattccactgactcctctgaggtgtttcagaaagttagaacaagaa |
561 |
Q |
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| T |
4347140 |
gctttgtcaaatggcttttcacgatgagaaagagtaagtttatttcacttctcttattccactgactcctctgaggtgtttcagaaagttagaacaagaa |
4347239 |
T |
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| Q |
562 |
caaatgacaatgacattgtgcaactggcccgtaccaataatgaagtcaaacattcaaaaatttattcaaccatgtcccattttgcacgttccttaaacag |
661 |
Q |
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| T |
4347240 |
catatgacaatgacattgtgcaactggcccataccaataatgaagtc-aacattcaaaaatttattcaaccatgt-ccattttgcacgttcctt-aaca- |
4347335 |
T |
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| Q |
662 |
ggacctagttgttgattccttactaa---------------------tgacttgatagtgacagggctcatagtagatttaaatcatctagatttccttt |
740 |
Q |
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| T |
4347336 |
ggacctagttgttgattccttactaatgatttagttggtgaggggcttgacttgatagtgaca-ggctcatagtagatttaaatcatctagatttccttt |
4347434 |
T |
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| Q |
741 |
atttcttgttttgatcaataaattattttgatgaaagagaatttattgattagaagagatat |
802 |
Q |
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| T |
4347435 |
atttcttgttttgatcaataaattattttgatgaaagagaa-ttattagttagaagagatat |
4347495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 115 - 157
Target Start/End: Complemental strand, 8424788 - 8424746
Alignment:
| Q |
115 |
cgagggaaaagaatcaaaccacttaaatatcccaccgagcatc |
157 |
Q |
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| T |
8424788 |
cgagggaaaagaatcaaaccacttaaatactccaccgaacatc |
8424746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 761 - 802
Target Start/End: Original strand, 38701548 - 38701588
Alignment:
| Q |
761 |
aattattttgatgaaagagaatttattgattagaagagatat |
802 |
Q |
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| T |
38701548 |
aattattttgatgaaagagaa-ttattggttagaagagatat |
38701588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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