View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5794-Insertion-3 (Length: 885)
Name: NF5794-Insertion-3
Description: NF5794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5794-Insertion-3 |
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| [»] chr8 (5 HSPs) |
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| [»] scaffold0146 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 769; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 769; E-Value: 0
Query Start/End: Original strand, 8 - 885
Target Start/End: Complemental strand, 37702065 - 37701194
Alignment:
| Q |
8 |
gttttctcactgatttcattgatgtgagtgnnnnnnnctcattataaagcttgattgatttcagtttaattttaattgctctaattgggatcataaactc |
107 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37702065 |
gttttctcactgatttcattgatgtgagtgtttttttctcattataaagcttgattgatttcagtttaattttaattgctctaattgggatcataaactc |
37701966 |
T |
|
| Q |
108 |
ttgttattattaggggatatagtatatggagtaatgttgtttacttaagaaattccacatgattggtcagaattttgatgatttattactggtttaagtt |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37701965 |
ttgttattattaggggatatagtatatggagtaatgttgtttacttaagaaattccacatgattggtcagaattttgatgatttattactggtttaagtt |
37701866 |
T |
|
| Q |
208 |
gaagtttattacactagataatgaatgaatttggattttgttgagaaatagtattattagttgtaatagttagttacaataattagttacatggttactt |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37701865 |
gaagtttattacactagataatgaatgaatttggattttgttgagaaatagtattattagttgtaatagttagttacaataattagttacatggttactt |
37701766 |
T |
|
| Q |
308 |
aagttagactaagggtctgtttgaattggtttattgttgttctatatgtctcagttgctgcttcagaatagaaagttcatctcttactgcttgtaatttt |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37701765 |
aagttagactaagggtctgtttgaattggtttattgttgttctatatgtctcagttgctgcttcagaatagaaagttcatctcttactgcttgtaatttt |
37701666 |
T |
|
| Q |
408 |
ttcacaatcactaactttttgagttgatcaacgaggtttcttagttcatctgtaatcnnnnnnncctcatcaatctgttgacgagctgtctctttcttca |
507 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
37701665 |
ttcacaatcactaactttttgagttgatcaacgaggtttcttagttcatctgtaatctttttttcctcatcaatctgttgacgagctgtctctttcttca |
37701566 |
T |
|
| Q |
508 |
tggccaagcttttgttttttgtcttcatatcctccaaattttgactcagttcagcttctactttaccggcaatgtccagttgcttattaagttcagtatt |
607 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
37701565 |
tggccaagcttttgttttttgtcttcatatcctccaaattttgactcagttcagcttctactttaccggcaatgttcagttgcttattaagttcagtatt |
37701466 |
T |
|
| Q |
608 |
ctcagcatcagttttcatatccatgtcaatcttgtatgctgattgtatcttgctcagggctgcaaggtgttttgattttatgtcctcctttctcttcatg |
707 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
37701465 |
ctcagcatcagttttcatatccatgtcaatcttgtatgctgattgtatcttgctcagggctgcaaggtgttttgattttatgtcctcc-ttctcttcatg |
37701367 |
T |
|
| Q |
708 |
tgtaatcgtcaactttctaatttaatttcagcgacttccttatgcgtcacttcaagttcttgctttaatccgtcagttatcttttgaaattcattttgca |
807 |
Q |
| |
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||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37701366 |
tgtaatcgtcaac-ttctaatttaa-ttcagcgacttccttatgcgtcacttcaagttcttgctttaatccgtcagttatcttttgaaattcattttgca |
37701269 |
T |
|
| Q |
808 |
tttgtccatttttactttctctgtcctttgaaggattattccggaaccctgagtcagagctagatgaggaacttccct |
885 |
Q |
| |
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||||||||||||| ||||||||||||||||||| || || | |||||| ||||||||||||||||| |||||||||| |
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| T |
37701268 |
tttgtccatttttgctttctctgtcctttgaagaataat--ccgaaccc-gagtcagagctagatgaagaacttccct |
37701194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 135; E-Value: 7e-70
Query Start/End: Original strand, 341 - 613
Target Start/End: Complemental strand, 41796537 - 41796259
Alignment:
| Q |
341 |
ttgttgttctatatgtctcagttgctgcttcagaatagaaagttcatctcttactgcttgtaattttttcacaatcactaactt------tttgagttga |
434 |
Q |
| |
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|||||||||| |||| ||| |||||||||||||||||||||||||||| || |||||||||||| ||| ||||||||||||| ||| | |||| |
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| T |
41796537 |
ttgttgttctgcatgtttcaattgctgcttcagaatagaaagttcatctgttgctgcttgtaattcttttgcaatcactaacttatcatctttcaattga |
41796438 |
T |
|
| Q |
435 |
tcaacgaggtttcttagttcatctgtaatcnnnnnnncctcatcaatctgttgacgagctgtctctttcttcatggccaagcttttgttttttgtcttca |
534 |
Q |
| |
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|||||||||||||| || ||||||| | || |||| |||||||| ||| ||||||||||||||| || ||||||||| ||||||| |||||||| |
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| T |
41796437 |
tcaacgaggtttctcaggtcatctgcagtcttcctttcctcgtcaatctggtgaagagctgtctctttctccacggccaagctattgttttctgtcttca |
41796338 |
T |
|
| Q |
535 |
tatcctccaaattttgactcagttcagcttctactttaccggcaatgtccagttgcttattaagttcagtattctcagc |
613 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
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| T |
41796337 |
tatcctccaatttttgactcagttcagcttctactttaccagcaatgtccagttgcttatttagttcagtattctcagc |
41796259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 93; E-Value: 8e-45
Query Start/End: Original strand, 612 - 840
Target Start/End: Complemental strand, 41796224 - 41795999
Alignment:
| Q |
612 |
gcatcagttttcatatccatgtcaatcttgtatgctgattgtatcttgctcagggctgcaaggtgttttgattttatgtcctcctttctcttcatgtgta |
711 |
Q |
| |
|
||||||||||||| |||||| || ||||| |||| ||||||||||||||| ||||||||||||||||| |||||||| ||||| ||||||||||||| |
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| T |
41796224 |
gcatcagttttcaaatccatactaaccttgtctgcttcttgtatcttgctcagtgctgcaaggtgttttgaatttatgtcatcctt-ctcttcatgtgta |
41796126 |
T |
|
| Q |
712 |
atcgtcaactttctaatttaatttcagcgacttccttatgcgtcacttcaagttcttgctttaatccgtcagttatcttttgaaattcattttgcatttg |
811 |
Q |
| |
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|| |||||||| || |||||| | ||||| |||||||||| | |||||||||||||||||||||||| ||| ||||||||||||| ||||||| | ||| |
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| T |
41796125 |
attgtcaactt-ctgatttaagt-cagcggcttccttatgtgccacttcaagttcttgctttaatccatcaattatcttttgaaactcattttctagttg |
41796028 |
T |
|
| Q |
812 |
tccatttttactttctctgtcctttgaag |
840 |
Q |
| |
|
|| ||||| || ||||||||||||||| |
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| T |
41796027 |
accgtttttgctgcctctgtcctttgaag |
41795999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 472 - 539
Target Start/End: Original strand, 32472676 - 32472743
Alignment:
| Q |
472 |
cctcatcaatctgttgacgagctgtctctttcttcatggccaagcttttgttttttgtcttcatatcc |
539 |
Q |
| |
|
||||||||||||||||| || || |||||||| ||||||||||||||| |||||| |||||||||| |
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| T |
32472676 |
cctcatcaatctgttgaagaattgcctctttctccatggccaagcttttctttttttccttcatatcc |
32472743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 270 - 299
Target Start/End: Original strand, 10223490 - 10223519
Alignment:
| Q |
270 |
gtaatagttagttacaataattagttacat |
299 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
10223490 |
gtaatagttagttacaataattagttacat |
10223519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 472 - 539
Target Start/End: Original strand, 36758732 - 36758799
Alignment:
| Q |
472 |
cctcatcaatctgttgacgagctgtctctttcttcatggccaagcttttgttttttgtcttcatatcc |
539 |
Q |
| |
|
|||||||||||| |||| || || |||||||| |||||||||||||||||||||| |||| |||||| |
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|
| T |
36758732 |
cctcatcaatctcttgaagaattgcctctttctccatggccaagcttttgttttttttctttatatcc |
36758799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 257 - 295
Target Start/End: Complemental strand, 14201342 - 14201304
Alignment:
| Q |
257 |
agtattattagttgtaatagttagttacaataattagtt |
295 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||| |
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| T |
14201342 |
agtattattagatgtaatagttagttacaataattagtt |
14201304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 262 - 298
Target Start/End: Original strand, 29051289 - 29051325
Alignment:
| Q |
262 |
tattagttgtaatagttagttacaataattagttaca |
298 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| |
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| T |
29051289 |
tattagatgtaatagttagttacaataattagttaca |
29051325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0146 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0146
Description:
Target: scaffold0146; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 474 - 539
Target Start/End: Original strand, 24732 - 24798
Alignment:
| Q |
474 |
tcatcaatctgttgacgagctgtctctttcttcatggccaagcttttg-ttttttgtcttcatatcc |
539 |
Q |
| |
|
|||||||||| |||| || || |||||||| |||||||||||||||| |||||| ||||||||||| |
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| T |
24732 |
tcatcaatctattgaagaattgcctctttctccatggccaagcttttgtttttttttcttcatatcc |
24798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 270 - 315
Target Start/End: Complemental strand, 486634 - 486588
Alignment:
| Q |
270 |
gtaatagttagttacaataattagttaca-tggttacttaagttaga |
315 |
Q |
| |
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||||||||||||||||||||| ||||||| |||||| |||||||||| |
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| T |
486634 |
gtaatagttagttacaataatcagttacactggttagttaagttaga |
486588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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