View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5794-Insertion-4 (Length: 800)
Name: NF5794-Insertion-4
Description: NF5794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5794-Insertion-4 |
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| [»] chr8 (5 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 420; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 310 - 800
Target Start/End: Complemental strand, 7501084 - 7500594
Alignment:
| Q |
310 |
tgagaatagctagaatacgtaaataaattaactataaaggagatattaaactgaaaacactaatcaatatcaaagctaatttcctgaatcatagcttgaa |
409 |
Q |
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| T |
7501084 |
tgagaatagctagaatacgtaaataaattaactataaaggagatattaaactgaaaacactaatcaatatcaaagctaatttcctgaatcatagcttgaa |
7500985 |
T |
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| Q |
410 |
aacaatagcttgttcaactcaacaatttctttcaccatattttgtgggttttgtgcctcttgtacnnnnnnnnnnnnnnnnnaaggagtacctcttgtac |
509 |
Q |
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| T |
7500984 |
aacaatagcttgttcaactcaacaatttctttcaccatattttgtgggtttagtgcctcttgtatttattttttatttttttagggagtacctcttgtac |
7500885 |
T |
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| Q |
510 |
tcattctcatctttctattttaataaatattcatttgctgcttaaagaaaactcccttcacccatcatgaataatttcagtaggttagatccagacatca |
609 |
Q |
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| T |
7500884 |
tcattctcatctttctattttaataaatattcatttgctgctaaaagaaaactcccttcacccatcatgaataatttcagtaggttagatccagacatca |
7500785 |
T |
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| Q |
610 |
tccagacctatatccttccacgcctcgatggggcagccttaatggcattgtcctgtgtatgttctgaccttcgccacttgatctgcaacaacgaggaatt |
709 |
Q |
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| T |
7500784 |
tccagacctatatccttccacgcctcgatggggcagccttaatggcattgtcctgtgtatgttccgaccttcgccacttgatctgcaacaacgaggaatt |
7500685 |
T |
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| Q |
710 |
atggcggaacatttgcacctccatgtggccttgccttctgcatccaaccgttagccacattatcaccactttccctggtggttaccgttcc |
800 |
Q |
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| T |
7500684 |
atggcggaacatttgcacctccatgtggccttgccttctgcatccaaccgttagccacattatcaccactttccctggtggttaccgttcc |
7500594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 118; E-Value: 9e-60
Query Start/End: Original strand, 51 - 180
Target Start/End: Complemental strand, 7509182 - 7509053
Alignment:
| Q |
51 |
tgaagcaaggtgccaccattctccttaatgcaattcaaaatggggagaggaagaaatttgatttaccaaagcaagagtttgacaaattccacatcagtaa |
150 |
Q |
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| T |
7509182 |
tgaagcaaggtgccaccattctccttaatgcaattcaaaatggggagaggaagaaatttgatttaccaaagcaagaggttgacaaattccaaatcagtaa |
7509083 |
T |
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| Q |
151 |
attgcaaaggaagaagaataggaaaaggaa |
180 |
Q |
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| T |
7509082 |
tttgcaaaggaagaagaataggaaaaggaa |
7509053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 200 - 241
Target Start/End: Complemental strand, 7501196 - 7501155
Alignment:
| Q |
200 |
tcctaagtgttctttctataatgtatcctaaatttattattt |
241 |
Q |
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| T |
7501196 |
tcctaagtgttctttctataatgtgtcctaaatttattattt |
7501155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 570 - 610
Target Start/End: Original strand, 8057200 - 8057240
Alignment:
| Q |
570 |
cccatcatgaataatttcagtaggttagatccagacatcat |
610 |
Q |
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| T |
8057200 |
cccatcatgaataatttcagtaggttatgtccagacatcat |
8057240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 709 - 799
Target Start/End: Complemental strand, 7502118 - 7502028
Alignment:
| Q |
709 |
tatggcggaacatttgcacctccatgtggccttgccttctgcatccaaccgttagccacattatcaccactttccctggtggttaccgttc |
799 |
Q |
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| T |
7502118 |
tatggcggaatatttgcacctcaaagtggccttcccttatggatccaatcgttaacgatgtcatctccactttccccggtggttacagttc |
7502028 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 2e-17; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 51 - 117
Target Start/End: Original strand, 27241492 - 27241558
Alignment:
| Q |
51 |
tgaagcaaggtgccaccattctccttaatgcaattcaaaatggggagaggaagaaatttgatttacc |
117 |
Q |
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| T |
27241492 |
tgaatcaatgtgtcaccattcttcttaatgcaattcaaaatggtgagaggaagaaatttgatttacc |
27241558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 64 - 137
Target Start/End: Original strand, 27249111 - 27249183
Alignment:
| Q |
64 |
caccattctccttaatgcaattcaaaatggggagaggaagaaatttgatttaccaaagcaagagtttgacaaat |
137 |
Q |
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| T |
27249111 |
caccattcttcttaatgcaattcaaaatggcgagaggaagaaattcgattaacccaag-aagagtttgtcaaat |
27249183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 585 - 741
Target Start/End: Original strand, 27240723 - 27240882
Alignment:
| Q |
585 |
ttcagtaggttagatccagacatcatccagacctatatccttccacgcctcgatggggcagccttaatggcattgtcctgtgtatgttctgaccttcgcc |
684 |
Q |
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| T |
27240723 |
ttcagtaggttagatccagacatcatgcatacccacatccttccccgcctcgacggcacaaccttaatcgtcttattctctgtatgttcagaactccgtc |
27240822 |
T |
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| Q |
685 |
acttgatctg---caacaacgaggaattatggcggaacatttgcacctccatgtggcctt |
741 |
Q |
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| T |
27240823 |
acatgatttgccacaacaacgaagatctatggcggaacatatgcacctcaaagtggcctt |
27240882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 660 - 727
Target Start/End: Original strand, 27253110 - 27253177
Alignment:
| Q |
660 |
tcctgtgtatgttctgaccttcgccacttgatctgcaacaacgaggaattatggcggaacatttgcac |
727 |
Q |
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| T |
27253110 |
tcctgtgtatcttcagaactccgccacatgatctgcaacaacgaagatctatggcggaacatatgcac |
27253177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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