View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5794-Insertion-5 (Length: 676)

Name: NF5794-Insertion-5
Description: NF5794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5794-Insertion-5
NF5794-Insertion-5
[»] chr7 (25 HSPs)
chr7 (8-220)||(37854418-37854631)
chr7 (274-521)||(37854686-37854938)
chr7 (549-646)||(37854937-37855043)
chr7 (594-672)||(48395248-48395328)
chr7 (593-672)||(6892624-6892705)
chr7 (593-672)||(28109956-28110037)
chr7 (592-672)||(48314352-48314434)
chr7 (593-656)||(6427209-6427274)
chr7 (593-672)||(7212654-7212739)
chr7 (597-672)||(11503568-11503641)
chr7 (592-657)||(32777713-32777780)
chr7 (594-658)||(37392043-37392108)
chr7 (599-658)||(22588966-22589027)
chr7 (589-627)||(25200397-25200435)
chr7 (593-631)||(49069248-49069286)
chr7 (592-658)||(2347065-2347132)
chr7 (594-672)||(8352774-8352854)
chr7 (594-631)||(10656632-10656669)
chr7 (594-631)||(30864451-30864488)
chr7 (594-631)||(31274563-31274600)
chr7 (590-631)||(33050179-33050220)
chr7 (595-672)||(17909041-17909120)
chr7 (595-631)||(23910285-23910321)
chr7 (595-631)||(37325853-37325889)
chr7 (591-672)||(47925334-47925417)
[»] chr6 (12 HSPs)
chr6 (596-672)||(38598-38676)
chr6 (597-648)||(13093629-13093680)
chr6 (594-672)||(25109044-25109123)
chr6 (597-672)||(20029264-20029341)
chr6 (589-658)||(17551384-17551455)
chr6 (594-658)||(31883309-31883375)
chr6 (588-631)||(32644617-32644660)
chr6 (594-631)||(2056783-2056820)
chr6 (590-631)||(3660387-3660428)
chr6 (594-631)||(9954548-9954585)
chr6 (594-631)||(31517203-31517240)
chr6 (588-658)||(32729883-32729954)
[»] chr5 (30 HSPs)
chr5 (593-672)||(26754629-26754710)
chr5 (594-672)||(43057435-43057515)
chr5 (597-672)||(19645611-19645686)
chr5 (593-672)||(8728570-8728653)
chr5 (594-672)||(2629818-2629900)
chr5 (591-672)||(17063862-17063945)
chr5 (588-658)||(28903985-28904056)
chr5 (588-658)||(28940380-28940451)
chr5 (594-672)||(30838356-30838436)
chr5 (594-658)||(14780428-14780492)
chr5 (592-631)||(4719648-4719687)
chr5 (588-631)||(30574411-30574454)
chr5 (594-672)||(844036-844113)
chr5 (606-676)||(34674868-34674940)
chr5 (592-658)||(35570811-35570879)
chr5 (592-672)||(19127122-19127204)
chr5 (594-658)||(11148511-11148577)
chr5 (593-640)||(41621953-41622000)
chr5 (593-631)||(3263542-3263580)
chr5 (593-631)||(9599762-9599800)
chr5 (593-631)||(12718414-12718452)
chr5 (593-631)||(12779640-12779678)
chr5 (589-631)||(14206395-14206437)
chr5 (589-631)||(42699052-42699094)
chr5 (594-631)||(9594478-9594515)
chr5 (595-672)||(31024996-31025075)
chr5 (591-631)||(16143387-16143427)
chr5 (594-630)||(33823728-33823764)
chr5 (595-631)||(39032855-39032891)
chr5 (588-616)||(40829408-40829436)
[»] chr8 (25 HSPs)
chr8 (593-672)||(4721728-4721809)
chr8 (587-672)||(30170720-30170807)
chr8 (593-676)||(28434441-28434526)
chr8 (594-658)||(26629115-26629181)
chr8 (598-676)||(37379421-37379501)
chr8 (591-648)||(42652498-42652555)
chr8 (594-671)||(13592766-13592845)
chr8 (594-672)||(7678732-7678812)
chr8 (590-672)||(21467380-21467462)
chr8 (592-648)||(8835887-8835943)
chr8 (592-631)||(9047093-9047132)
chr8 (592-631)||(30943873-30943912)
chr8 (589-635)||(13885770-13885816)
chr8 (589-631)||(20288528-20288570)
chr8 (589-631)||(21075157-21075199)
chr8 (590-631)||(5601021-5601062)
chr8 (590-631)||(5639558-5639599)
chr8 (594-631)||(5740808-5740845)
chr8 (594-631)||(12659052-12659089)
chr8 (596-658)||(21648937-21649000)
chr8 (594-631)||(37392151-37392188)
chr8 (595-631)||(895935-895971)
chr8 (594-630)||(1065417-1065453)
chr8 (594-646)||(5771991-5772043)
chr8 (594-659)||(7376506-7376572)
[»] chr2 (26 HSPs)
chr2 (594-672)||(31227543-31227621)
chr2 (589-671)||(28481776-28481858)
chr2 (594-667)||(24727586-24727661)
chr2 (593-673)||(40874251-40874333)
chr2 (589-672)||(22966781-22966866)
chr2 (593-672)||(25507254-25507337)
chr2 (594-672)||(13453946-13454026)
chr2 (594-672)||(43820732-43820812)
chr2 (597-670)||(40602383-40602458)
chr2 (590-658)||(23690515-23690585)
chr2 (592-672)||(31629602-31629684)
chr2 (588-658)||(7438562-7438632)
chr2 (592-658)||(15123941-15124009)
chr2 (588-658)||(30856801-30856872)
chr2 (597-656)||(9365923-9365982)
chr2 (592-631)||(25801836-25801875)
chr2 (594-628)||(2308359-2308393)
chr2 (593-631)||(30487503-30487541)
chr2 (593-631)||(45376255-45376293)
chr2 (594-631)||(28013967-28014004)
chr2 (594-631)||(29168725-29168762)
chr2 (594-672)||(29472022-29472101)
chr2 (594-631)||(37966367-37966404)
chr2 (594-672)||(40106609-40106689)
chr2 (641-669)||(2842875-2842903)
chr2 (607-672)||(15610823-15610890)
[»] chr4 (30 HSPs)
chr4 (597-672)||(13140294-13140369)
chr4 (593-648)||(44121249-44121304)
chr4 (594-648)||(22786661-22786715)
chr4 (593-672)||(56215604-56215685)
chr4 (594-672)||(25539862-25539940)
chr4 (598-672)||(40293244-40293318)
chr4 (594-676)||(51957519-51957601)
chr4 (595-672)||(17367446-17367523)
chr4 (594-672)||(32058366-32058446)
chr4 (594-672)||(35206168-35206248)
chr4 (594-631)||(40983086-40983123)
chr4 (589-658)||(54000693-54000764)
chr4 (592-631)||(7037518-7037557)
chr4 (593-672)||(15596395-15596476)
chr4 (592-631)||(32012894-32012933)
chr4 (594-658)||(44272816-44272881)
chr4 (594-658)||(50831761-50831827)
chr4 (589-631)||(9032775-9032817)
chr4 (593-631)||(23220334-23220372)
chr4 (593-631)||(39241324-39241362)
chr4 (594-631)||(1796366-1796403)
chr4 (594-631)||(2109443-2109480)
chr4 (594-631)||(5208361-5208398)
chr4 (594-672)||(10762493-10762573)
chr4 (594-631)||(42490920-42490957)
chr4 (594-631)||(50721779-50721816)
chr4 (594-631)||(51377327-51377364)
chr4 (594-631)||(55268035-55268072)
chr4 (594-630)||(27001444-27001480)
chr4 (594-630)||(51717317-51717353)
[»] chr3 (24 HSPs)
chr3 (593-669)||(39284663-39284739)
chr3 (594-672)||(9326976-9327056)
chr3 (597-672)||(11323912-11323987)
chr3 (596-656)||(41850945-41851007)
chr3 (594-672)||(19623243-19623323)
chr3 (593-671)||(41442171-41442251)
chr3 (594-658)||(3069581-3069645)
chr3 (593-658)||(32457761-32457827)
chr3 (619-672)||(37073685-37073740)
chr3 (594-658)||(36869843-36869908)
chr3 (594-658)||(41448181-41448247)
chr3 (594-658)||(48405410-48405476)
chr3 (592-631)||(50879593-50879632)
chr3 (589-627)||(9719479-9719517)
chr3 (594-648)||(38017944-38017998)
chr3 (585-631)||(52454128-52454174)
chr3 (591-672)||(462392-462475)
chr3 (590-631)||(19418191-19418232)
chr3 (594-672)||(31143270-31143350)
chr3 (594-631)||(32931952-32931989)
chr3 (594-631)||(36818956-36818993)
chr3 (589-658)||(1901932-1902002)
chr3 (589-658)||(1911378-1911448)
chr3 (594-630)||(20714243-20714279)
[»] chr1 (21 HSPs)
chr1 (588-658)||(16658432-16658503)
chr1 (584-631)||(9987941-9987988)
chr1 (594-672)||(35883598-35883678)
chr1 (594-646)||(33694220-33694272)
chr1 (591-630)||(13813555-13813594)
chr1 (593-672)||(20288330-20288412)
chr1 (594-658)||(33675900-33675965)
chr1 (592-631)||(48872051-48872090)
chr1 (594-665)||(25031710-25031783)
chr1 (594-672)||(30530565-30530645)
chr1 (589-631)||(49020438-49020480)
chr1 (590-631)||(3672337-3672378)
chr1 (590-631)||(29362726-29362767)
chr1 (619-672)||(43891760-43891813)
chr1 (594-631)||(45272183-45272220)
chr1 (590-631)||(47059913-47059954)
chr1 (597-658)||(51172313-51172373)
chr1 (595-672)||(1523285-1523364)
chr1 (590-630)||(5309075-5309115)
chr1 (593-658)||(32821634-32821700)
chr1 (595-631)||(51571416-51571452)
[»] scaffold1625 (1 HSPs)
scaffold1625 (598-672)||(772-848)
[»] scaffold0392 (1 HSPs)
scaffold0392 (594-669)||(12243-12319)
[»] scaffold0054 (1 HSPs)
scaffold0054 (594-631)||(31623-31660)
[»] scaffold0049 (1 HSPs)
scaffold0049 (594-658)||(72177-72240)


Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-107; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 8 - 220
Target Start/End: Original strand, 37854418 - 37854631
Alignment:
Q  8 ggttctgttggcttgccttcattttaaattgaagatccaggagtagattctaagtttattctgaattatcatatgagcatagaacataagctaccccact 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37854418 ggttctgttggcttgccttcattttaaattgaagatccaggagtagattctaagtttattctgaattatcatatgagcatagaacataagctaccccact 37854517  T
Q  108 cgtgttgtcaataggctaactctgaaatccctcaatgaattaatcaggaataatttattttctaaattaatcaggaaataagtt-tatcctaggattttt 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||||||||    
T  37854518 cgtgttgtcaataggctaactctgaaatccctcaatgaattaatcaggaataatttattttctaaattaatcaggaaataatttatttcctaggattttt 37854617  T
Q  207 tgcaacttattttg 220  Q
    ||||||||||||||    
T  37854618 tgcaacttattttg 37854631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 274 - 521
Target Start/End: Original strand, 37854686 - 37854938
Alignment:
Q  274 caaagttattttcttttacaatctgtatcatattcatatgtgattgccaggtattttattttatatgattccccaccgaaaacatcttagaatgaaagcc 373  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  37854686 caaagttattttcttttacaatctgtatcatattcatatgtgattgccaggtattttattttatatgattctccaccgaaaacatcttagaatgaaagcc 37854785  T
Q  374 aaagactcgcatgtatgtcacagactcattactgnnnnnnngtgaaactcatggttaacaaagaatgttagagattaatataattgattcgtggaactaa 473  Q
    ||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  37854786 aaagactcgcatgtatgtcacagactcattactgaaaaaaagtgaaactcatggttaacaaagaatgttagagattaatataattgattcgtagaactaa 37854885  T
Q  474 ctaatg-----caaatcgctttatgtaaaagctgaaaatgtgactatgtacca 521  Q
    ||||||      |||||||||||||||||||||||||||||||| || |||||    
T  37854886 ctaatgtcaccgaaatcgctttatgtaaaagctgaaaatgtgaccatatacca 37854938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 549 - 646
Target Start/End: Original strand, 37854937 - 37855043
Alignment:
Q  549 cattttctgaaattgttaaaaacaaaagtcaaataca---------actaaaatgagaaatgatatttgtacaaccaaattttgacaactttgaaaacaa 639  Q
    |||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||    
T  37854937 cattttctgaaattgttaaaaacaaaagtcaaatacaacaattacaactaaaatgagaaatgatatttgtaaaaccaaattttgacaactttgaaaataa 37855036  T
Q  640 ctctctc 646  Q
    |||||||    
T  37855037 ctctctc 37855043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 594 - 672
Target Start/End: Original strand, 48395248 - 48395328
Alignment:
Q  594 gagaaatgatatttgtacaaccaaattttgacaactttgaaaacaactctctctc--atactcacatatatttttattctc 672  Q
    |||||||||||||||||||||||  |||||||||||||  |||||||||||||||  |||||||||||| |||||||||||    
T  48395248 gagaaatgatatttgtacaaccactttttgacaacttttgaaacaactctctctcttatactcacatatgtttttattctc 48395328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 593 - 672
Target Start/End: Complemental strand, 6892705 - 6892624
Alignment:
Q  593 tgagaaatgatatttgtacaaccaaattttgacaactttgaaaacaa--ctctctctcatactcacatatatttttattctc 672  Q
    ||||||||||||||||||||||||   |||||||||||   ||||||  ||||||||||||||||||| | |||||||||||    
T  6892705 tgagaaatgatatttgtacaaccactctttgacaacttatgaaacaaccctctctctcatactcacatgtgtttttattctc 6892624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 593 - 672
Target Start/End: Original strand, 28109956 - 28110037
Alignment:
Q  593 tgagaaatgatatttgtacaaccaaattttgacaactttgaaaacaac--tctctctcatactcaca-tatatttttattctc 672  Q
    ||||||||||||||||||||||||  |||||||||||||  |||||||  | |||| |||||||||| |||||||||||||||    
T  28109956 tgagaaatgatatttgtacaaccactttttgacaacttt-taaacaactttatctcacatactcacattatatttttattctc 28110037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 592 - 672
Target Start/End: Complemental strand, 48314434 - 48314352
Alignment:
Q  592 atgagaaatgatatttgtacaaccaaattttgacaactttgaaaacaa--ctctctctcatactcacatatatttttattctc 672  Q
    |||||||||||||||||||||||||  |||| |||||||| | |||||  |||||||||||||| ||||   |||||||||||    
T  48314434 atgagaaatgatatttgtacaaccactttttaacaacttttacaacaaccctctctctcatacttacatgagtttttattctc 48314352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 593 - 656
Target Start/End: Original strand, 6427209 - 6427274
Alignment:
Q  593 tgagaaatgatatttgtacaaccaaattttgacaactttgaaaacaa--ctctctctcatactcac 656  Q
    ||||||||||||||| ||||||||  ||||||||||||| | |||||  |||||||||||||||||    
T  6427209 tgagaaatgatatttatacaaccactttttgacaacttttagaacaaccctctctctcatactcac 6427274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 593 - 672
Target Start/End: Complemental strand, 7212739 - 7212654
Alignment:
Q  593 tgagaaatgatatttgtacaaccaaattttgacaactttgaaaacaa------ctctctctcatactcacatatatttttattctc 672  Q
    |||||||||||||||||||||| |  |||| |||||||| |||||||      ||||||||||||||||||| | |||||||||||    
T  7212739 tgagaaatgatatttgtacaactactttttcacaacttttaaaacaactttctctctctctcatactcacatgtgtttttattctc 7212654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 597 - 672
Target Start/End: Complemental strand, 11503641 - 11503568
Alignment:
Q  597 aaatgatatttgtacaaccaaattttgacaactttgaaaacaactctctctcatactcacatatatttttattctc 672  Q
    |||||||||||||||||||| |||||||||||||    |||||  |||||||||||||||||   |||||||||||    
T  11503641 aaatgatatttgtacaaccacattttgacaacttatggaacaa--ctctctcatactcacatgcgtttttattctc 11503568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 592 - 657
Target Start/End: Complemental strand, 32777780 - 32777713
Alignment:
Q  592 atgagaaatgatatttgtacaaccaaattttgacaactttgaaaacaac--tctctctcatactcaca 657  Q
    ||||||||||||||||| |||||||  ||||||||||||| |  |||||  |||||||||||||||||    
T  32777780 atgagaaatgatatttgaacaaccattttttgacaacttttatgacaactttctctctcatactcaca 32777713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 594 - 658
Target Start/End: Original strand, 37392043 - 37392108
Alignment:
Q  594 gagaaatgatatttgtacaaccaaattttgacaactttgaaaacaac--tctctctcatactcacat 658  Q
    |||||||||||||||||||||||  |||||||||||||  |||||||  | ||||||||||||||||    
T  37392043 gagaaatgatatttgtacaaccattttttgacaacttt-taaacaactttatctctcatactcacat 37392108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 599 - 658
Target Start/End: Complemental strand, 22589027 - 22588966
Alignment:
Q  599 atgatatttgtacaaccaaattttgacaactttgaaaacaa--ctctctctcatactcacat 658  Q
    ||||||||||||||||||  |||||||||||||  ||||||  | |||||||||||||||||    
T  22589027 atgatatttgtacaaccattttttgacaacttttgaaacaaccccctctctcatactcacat 22588966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 589 - 627
Target Start/End: Complemental strand, 25200435 - 25200397
Alignment:
Q  589 aaaatgagaaatgatatttgtacaaccaaattttgacaa 627  Q
    ||||||||||||||||||||||||||||| || ||||||    
T  25200435 aaaatgagaaatgatatttgtacaaccaatttgtgacaa 25200397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 593 - 631
Target Start/End: Original strand, 49069248 - 49069286
Alignment:
Q  593 tgagaaatgatatttgtacaaccaaattttgacaacttt 631  Q
    ||||||||||||||||||||||||  |||||||||||||    
T  49069248 tgagaaatgatatttgtacaaccactttttgacaacttt 49069286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 592 - 658
Target Start/End: Complemental strand, 2347132 - 2347065
Alignment:
Q  592 atgagaaatgatatttgtacaaccaaattttgacaactttgaaaacaac--tctctctcatactcacat 658  Q
    |||||||||||||||||||||||||  || |||||||||||   |||||  ||||||||||||||||||    
T  2347132 atgagaaatgatatttgtacaaccattttgtgacaactttg-gtacaactttctctctcatactcacat 2347065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 594 - 672
Target Start/End: Original strand, 8352774 - 8352854
Alignment:
Q  594 gagaaatgatatttgtacaaccaaattttgacaactttgaaaacaac--tctctctcatactcacatatatttttattctc 672  Q
    |||||||||||||| ||||||||  ||||||||| |||  |||||||  ||||||||||||| |||| |  ||||||||||    
T  8352774 gagaaatgatatttatacaaccactttttgacaatttttgaaacaaccatctctctcatacttacatgtgcttttattctc 8352854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 594 - 631
Target Start/End: Original strand, 10656632 - 10656669
Alignment:
Q  594 gagaaatgatatttgtacaaccaaattttgacaacttt 631  Q
    |||||||||||||||||||||||| || ||||||||||    
T  10656632 gagaaatgatatttgtacaaccaatttctgacaacttt 10656669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 594 - 631
Target Start/End: Complemental strand, 30864488 - 30864451
Alignment:
Q  594 gagaaatgatatttgtacaaccaaattttgacaacttt 631  Q
    |||||||||||||||||||||||| || ||||||||||    
T  30864488 gagaaatgatatttgtacaaccaatttgtgacaacttt 30864451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 594 - 631
Target Start/End: Complemental strand, 31274600 - 31274563
Alignment:
Q  594 gagaaatgatatttgtacaaccaaattttgacaacttt 631  Q
    |||||||||||||||||||||||| || ||||||||||    
T  31274600 gagaaatgatatttgtacaaccaatttgtgacaacttt 31274563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 590 - 631
Target Start/End: Original strand, 33050179 - 33050220
Alignment:
Q  590 aaatgagaaatgatatttgtacaaccaaattttgacaacttt 631  Q
    |||||||||||||||||||||||||||  || ||||||||||    
T  33050179 aaatgagaaatgatatttgtacaaccattttgtgacaacttt 33050220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 595 - 672
Target Start/End: Complemental strand, 17909120 - 17909041
Alignment:
Q  595 agaaatgatatttgtacaaccaaattttgacaactttgaaaacaa--ctctctctcatactcacatatatttttattctc 672  Q
    |||||| |||||||||||| ||  |||||||||||||  ||| ||  ||||||||| ||||||||| | |||||||||||    
T  17909120 agaaataatatttgtacaatcattttttgacaacttttgaaataaccctctctctcgtactcacatgtgtttttattctc 17909041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 595 - 631
Target Start/End: Complemental strand, 23910321 - 23910285
Alignment:
Q  595 agaaatgatatttgtacaaccaaattttgacaacttt 631  Q
    ||||||||||||||||||||||  |||||||||||||    
T  23910321 agaaatgatatttgtacaaccattttttgacaacttt 23910285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 595 - 631
Target Start/End: Complemental strand, 37325889 - 37325853
Alignment:
Q  595 agaaatgatatttgtacaaccaaattttgacaacttt 631  Q
    ||||||||||||||||||||||| || ||||||||||    
T  37325889 agaaatgatatttgtacaaccaatttgtgacaacttt 37325853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 591 - 672
Target Start/End: Original strand, 47925334 - 47925417
Alignment:
Q  591 aatgagaaatgatatttgtacaaccaaattttgacaactttgaaaacaa--ctctctctcatactcacatatatttttattctc 672  Q
    |||||| |||||||||||||||||||   ||| ||||||||   |||||  ||||||||||||||||||| | |||| ||||||    
T  47925334 aatgaggaatgatatttgtacaaccactctttaacaacttttggaacaaccctctctctcatactcacatgtgttttaattctc 47925417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 3e-25; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 596 - 672
Target Start/End: Original strand, 38598 - 38676
Alignment:
Q  596 gaaatgatatttgtacaaccaaattttgacaactttgaaaacaa--ctctctctcatactcacatatatttttattctc 672  Q
    ||||||||||||||||||||||||||||||||||||| ||||||  ||||||||||||||||||| |||||||||||||    
T  38598 gaaatgatatttgtacaaccaaattttgacaactttggaaacaaccctctctctcatactcacatgtatttttattctc 38676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 597 - 648
Target Start/End: Original strand, 13093629 - 13093680
Alignment:
Q  597 aaatgatatttgtacaaccaaattttgacaactttgaaaacaactctctctc 648  Q
    ||||||||||||||||||||  |||||||||||||  |||||||||||||||    
T  13093629 aaatgatatttgtacaaccactttttgacaacttttgaaacaactctctctc 13093680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 594 - 672
Target Start/End: Original strand, 25109044 - 25109123
Alignment:
Q  594 gagaaatgatatttgtacaaccaaattttgacaactttgaaaacaa-ctctctctcatactcacatatatttttattctc 672  Q
    |||||| ||||||||||||   ||||||||||||||||  | |||| ||||||||||||||||||| | |||||||||||    
T  25109044 gagaaacgatatttgtacagttaaattttgacaactttagagacaatctctctctcatactcacatgtgtttttattctc 25109123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 597 - 672
Target Start/End: Original strand, 20029264 - 20029341
Alignment:
Q  597 aaatgatatttgtacaaccaaattttgacaactttgaaaacaac--tctctctcatactcacatatatttttattctc 672  Q
    ||||||||||| ||||||||  |||| ||||||||  |||||||  |||||||||||||||||| | |||||||||||    
T  20029264 aaatgatatttatacaaccactttttaacaacttttgaaacaaccttctctctcatactcacatgtgtttttattctc 20029341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 589 - 658
Target Start/End: Complemental strand, 17551455 - 17551384
Alignment:
Q  589 aaaatgagaaatgatatttgtacaaccaaattttgacaactttgaaaacaac--tctctctcatactcacat 658  Q
    |||| ||||||||||||||| |||||||  |||||||||||||   ||||||  ||||||||||||||||||    
T  17551455 aaaaagagaaatgatatttgaacaaccattttttgacaacttttgtaacaactttctctctcatactcacat 17551384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 594 - 658
Target Start/End: Complemental strand, 31883375 - 31883309
Alignment:
Q  594 gagaaatgatatttgtacaaccaaattttgacaactttgaaaacaactct--ctctcatactcacat 658  Q
    |||||||||||||||||||||||  |||||||||||||   ||||||| |  |||||||||||||||    
T  31883375 gagaaatgatatttgtacaaccactttttgacaacttttgtaacaacttttcctctcatactcacat 31883309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 588 - 631
Target Start/End: Original strand, 32644617 - 32644660
Alignment:
Q  588 taaaatgagaaatgatatttgtacaaccaaattttgacaacttt 631  Q
    ||||||||||||||||||||||||||| |  |||||||||||||    
T  32644617 taaaatgagaaatgatatttgtacaactattttttgacaacttt 32644660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 594 - 631
Target Start/End: Original strand, 2056783 - 2056820
Alignment:
Q  594 gagaaatgatatttgtacaaccaaattttgacaacttt 631  Q
    |||||||||||||||||||||||| || ||||||||||    
T  2056783 gagaaatgatatttgtacaaccaatttgtgacaacttt 2056820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 590 - 631
Target Start/End: Complemental strand, 3660428 - 3660387
Alignment:
Q  590 aaatgagaaatgatatttgtacaaccaaattttgacaacttt 631  Q
    ||||||||||| |||||||||||||||| || ||||||||||    
T  3660428 aaatgagaaattatatttgtacaaccaatttgtgacaacttt 3660387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 594 - 631
Target Start/End: Original strand, 9954548 - 9954585
Alignment:
Q  594 gagaaatgatatttgtacaaccaaattttgacaacttt 631  Q
    |||||||||||||||||||||||| || ||||||||||    
T  9954548 gagaaatgatatttgtacaaccaatttgtgacaacttt 9954585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 594 - 631
Target Start/End: Complemental strand, 31517240 - 31517203
Alignment:
Q  594 gagaaatgatatttgtacaaccaaattttgacaacttt 631  Q
    |||||||||||||||||||||||  |||||||||||||    
T  31517240 gagaaatgatatttgtacaaccactttttgacaacttt 31517203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 588 - 658
Target Start/End: Original strand, 32729883 - 32729954
Alignment:
Q  588 taaaatgagaaatgatatttgtacaaccaaattttgacaactttgaaaacaac--tctctctcatactcacat 658  Q
    ||||| |||||||||||||||||||||||  || ||||||||||  | |||||  ||||||||||||||||||    
T  32729883 taaaaagagaaatgatatttgtacaaccattttctgacaacttt-tatacaactttctctctcatactcacat 32729954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 3e-22; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 593 - 672
Target Start/End: Complemental strand, 26754710 - 26754629
Alignment:
Q  593 tgagaaatgatatttgtacaaccaaattttgacaactttgaaaacaa--ctctctctcatactcacatatatttttattctc 672  Q
    |||||||||||||||||||||||||||||||||||||||| | ||||  ||||||||||||||||||| | |||||||||||    
T  26754710 tgagaaatgatatttgtacaaccaaattttgacaactttggagacaaccctctctctcatactcacatgtgtttttattctc 26754629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 594 - 672
Target Start/End: Original strand, 43057435 - 43057515
Alignment:
Q  594 gagaaatgatatttgtacaaccaaattttgacaactttgaaaacaact--ctctctcatactcacatatatttttattctc 672  Q
    |||||||||||||||||||||||  |||||||||||||  ||| ||||  ||||||||||||||||||| |||||||||||    
T  43057435 gagaaatgatatttgtacaaccactttttgacaacttttgaaataactccctctctcatactcacatatgtttttattctc 43057515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 597 - 672
Target Start/End: Complemental strand, 19645686 - 19645611
Alignment:
Q  597 aaatgatatttgtacaaccaaattttgacaactttgaaaacaactctctctcatactcacatatatttttattctc 672  Q
    |||| ||||||||||||| | ||||||||||||||   || ||||||||||||||||||||| | |||||||||||    
T  19645686 aaattatatttgtacaactatattttgacaacttttgcaataactctctctcatactcacatgtgtttttattctc 19645611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 593 - 672
Target Start/End: Complemental strand, 8728653 - 8728570
Alignment:
Q  593 tgagaaatgatatttgtacaaccaaattttgacaactttgaaaacaa----ctctctctcatactcacatatatttttattctc 672  Q
    ||||||||||||||||||||||||  |||||||||||||  ||||||    ||||||||| ||||||||| || ||||||||||    
T  8728653 tgagaaatgatatttgtacaaccactttttgacaacttttgaaacaaccctctctctctcgtactcacatgtaattttattctc 8728570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 594 - 672
Target Start/End: Original strand, 2629818 - 2629900
Alignment:
Q  594 gagaaatgatatttgtacaaccaaattttgacaactttgaaaacaa----ctctctctcatactcacatatatttttattctc 672  Q
    |||||||||||||||||||||||  |||||||||||||  ||||||    |||||||||||| |||||| | |||||||||||    
T  2629818 gagaaatgatatttgtacaaccattttttgacaacttttgaaacaaccttctctctctcatattcacatgtttttttattctc 2629900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 591 - 672
Target Start/End: Original strand, 17063862 - 17063945
Alignment:
Q  591 aatgagaaatgatatttgtacaaccaaattttgacaactttgaaaacaac--tctctctcatactcaca-tatatttttattctc 672  Q
    ||||||||||||||||||||||| ||  |||||||||||||  |||||||  | ||||||||||||||| |||||||||||||||    
T  17063862 aatgagaaatgatatttgtacaatcattttttgacaacttt-taaacaactttatctctcatactcacattatatttttattctc 17063945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 588 - 658
Target Start/End: Original strand, 28903985 - 28904056
Alignment:
Q  588 taaaatgagaaatgatatttgtacaaccaaattttgacaactttgaaaacaac--tctctctcatactcacat 658  Q
    ||||||||||||||||||||||||||||| ||| ||||||||||  | |||||  ||||||||||||||||||    
T  28903985 taaaatgagaaatgatatttgtacaaccacattgtgacaacttt-tagacaactttctctctcatactcacat 28904056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 588 - 658
Target Start/End: Original strand, 28940380 - 28940451
Alignment:
Q  588 taaaatgagaaatgatatttgtacaaccaaattttgacaactttgaaaacaac--tctctctcatactcacat 658  Q
    ||||||||||||||||||||||||||||| ||| ||||||||||  | |||||  ||||||||||||||||||    
T  28940380 taaaatgagaaatgatatttgtacaaccacattgtgacaacttt-tagacaactttctctctcatactcacat 28940451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 594 - 672
Target Start/End: Complemental strand, 30838436 - 30838356
Alignment:
Q  594 gagaaatgatatttgtacaaccaaattttgacaactttgaaaacaac--tctctctcatactcacatatatttttattctc 672  Q
    ||||||||||||||||||| | |  |||||||||||||  |||||||  |||||||||||||||||| | |||||||||||    
T  30838436 gagaaatgatatttgtacatctactttttgacaacttttgaaacaaccatctctctcatactcacatgtgtttttattctc 30838356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 594 - 658
Target Start/End: Complemental strand, 14780492 - 14780428
Alignment:
Q  594 gagaaatgatatttgtacaaccaaattttgacaactttgaaaacaactctctctcatactcacat 658  Q
    ||||||||||||||||||| | |  |||||||||||||  ||| |||||||||||||||||||||    
T  14780492 gagaaatgatatttgtacatctactttttgacaacttttgaaataactctctctcatactcacat 14780428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 592 - 631
Target Start/End: Original strand, 4719648 - 4719687
Alignment:
Q  592 atgagaaatgatatttgtacaaccaaattttgacaacttt 631  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  4719648 atgagaaatgatatttgtacaaccaatttttgacaacttt 4719687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 588 - 631
Target Start/End: Complemental strand, 30574454 - 30574411
Alignment:
Q  588 taaaatgagaaatgatatttgtacaaccaaattttgacaacttt 631  Q
    |||||||||||||||||||||||||||||| || ||||||||||    
T  30574454 taaaatgagaaatgatatttgtacaaccaatttgtgacaacttt 30574411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 594 - 672
Target Start/End: Original strand, 844036 - 844113
Alignment:
Q  594 gagaaatgatatttgtacaaccaaattttgacaactttgaaaacaactctctctcatactcacatatatttttattctc 672  Q
    ||||||||||||||| |||||||  |||||||||||||  |||||| ||||||||||| |||||| | | |||||||||    
T  844036 gagaaatgatatttgcacaaccattttttgacaacttttgaaacaa-tctctctcatattcacatgtgtatttattctc 844113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 606 - 676
Target Start/End: Original strand, 34674868 - 34674940
Alignment:
Q  606 ttgtacaaccaaattttgacaactttgaaaacaac--tctctctcatactcacatatatttttattctccctc 676  Q
    |||||||||||  ||| ||||||||| ||||||||  ||| |||||||||| ||| |||||||||||||||||    
T  34674868 ttgtacaaccacttttcgacaacttttaaaacaaccatctttctcatactcgcatgtatttttattctccctc 34674940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 592 - 658
Target Start/End: Original strand, 35570811 - 35570879
Alignment:
Q  592 atgagaaatgatatttgtacaaccaaattttgacaactttgaaaacaa--ctctctctcatactcacat 658  Q
    ||||||||||||||||||||||  ||||||||| ||||||  | ||||  |||||||||||||||||||    
T  35570811 atgagaaatgatatttgtacaattaaattttgataactttttagacaaccctctctctcatactcacat 35570879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 592 - 672
Target Start/End: Original strand, 19127122 - 19127204
Alignment:
Q  592 atgagaaatgatatttgtacaaccaaattttgacaactt--tgaaaacaactctctctcatactcaca-tatatttttattctc 672  Q
    |||||||||||||||||||||||||  || |||||||||  ||| |||  |||||||||||||||||| ||| |||||||||||    
T  19127122 atgagaaatgatatttgtacaaccactttgtgacaacttcttgacaact-ctctctctcatactcacattatgtttttattctc 19127204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 594 - 658
Target Start/End: Original strand, 11148511 - 11148577
Alignment:
Q  594 gagaaatgatatttgtacaaccaaattttgacaactttgaaaacaac--tctctctcatactcacat 658  Q
    |||||||||||||||||||| ||| |||||||||||||    |||||  ||||||||||||||||||    
T  11148511 gagaaatgatatttgtacaatcaatttttgacaacttttgtgacaacattctctctcatactcacat 11148577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 593 - 640
Target Start/End: Complemental strand, 41622000 - 41621953
Alignment:
Q  593 tgagaaatgatatttgtacaaccaaattttgacaactttgaaaacaac 640  Q
    ||||||||||||||||||||||||  |||||||||||||  |||||||    
T  41622000 tgagaaatgatatttgtacaaccactttttgacaacttttgaaacaac 41621953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 593 - 631
Target Start/End: Complemental strand, 3263580 - 3263542
Alignment:
Q  593 tgagaaatgatatttgtacaaccaaattttgacaacttt 631  Q
    ||||||||||||||||||||||||| || ||||||||||    
T  3263580 tgagaaatgatatttgtacaaccaatttgtgacaacttt 3263542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 593 - 631
Target Start/End: Complemental strand, 9599800 - 9599762
Alignment:
Q  593 tgagaaatgatatttgtacaaccaaattttgacaacttt 631  Q
    ||||||||||||||||||||||||| || ||||||||||    
T  9599800 tgagaaatgatatttgtacaaccaatttgtgacaacttt 9599762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 593 - 631
Target Start/End: Complemental strand, 12718452 - 12718414
Alignment:
Q  593 tgagaaatgatatttgtacaaccaaattttgacaacttt 631  Q
    ||||||||||||||||||||||||| || ||||||||||    
T  12718452 tgagaaatgatatttgtacaaccaatttgtgacaacttt 12718414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 593 - 631
Target Start/End: Complemental strand, 12779678 - 12779640
Alignment:
Q  593 tgagaaatgatatttgtacaaccaaattttgacaacttt 631  Q
    ||||||||||||||||||||||||| || ||||||||||    
T  12779678 tgagaaatgatatttgtacaaccaatttgtgacaacttt 12779640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 589 - 631
Target Start/End: Original strand, 14206395 - 14206437
Alignment:
Q  589 aaaatgagaaatgatatttgtacaaccaaattttgacaacttt 631  Q
    |||| |||||||||||||||||||||||  |||||||||||||    
T  14206395 aaaaagagaaatgatatttgtacaaccattttttgacaacttt 14206437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 589 - 631
Target Start/End: Original strand, 42699052 - 42699094
Alignment:
Q  589 aaaatgagaaatgatatttgtacaaccaaattttgacaacttt 631  Q
    ||||||||||||||||||||||||||||  || ||||||||||    
T  42699052 aaaatgagaaatgatatttgtacaaccattttgtgacaacttt 42699094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 594 - 631
Target Start/End: Original strand, 9594478 - 9594515
Alignment:
Q  594 gagaaatgatatttgtacaaccaaattttgacaacttt 631  Q
    |||||||||||||||||||||||| || ||||||||||    
T  9594478 gagaaatgatatttgtacaaccaatttgtgacaacttt 9594515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 595 - 672
Target Start/End: Complemental strand, 31025075 - 31024996
Alignment:
Q  595 agaaatgatatttgtacaaccaaattttgacaactttgaaaacaac--tctctctcatactcaca-tatatttttattctc 672  Q
    |||||||||||||||||||||| ||| |||||| |||   ||||||  ||||||||||||||||| |||||| ||||||||    
T  31025075 agaaatgatatttgtacaaccacattatgacaa-ttttttaacaactttctctctcatactcacattatattcttattctc 31024996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 591 - 631
Target Start/End: Original strand, 16143387 - 16143427
Alignment:
Q  591 aatgagaaatgatatttgtacaaccaaattttgacaacttt 631  Q
    ||||||||||||||||||||||||||  || ||||||||||    
T  16143387 aatgagaaatgatatttgtacaaccattttgtgacaacttt 16143427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 594 - 630
Target Start/End: Complemental strand, 33823764 - 33823728
Alignment:
Q  594 gagaaatgatatttgtacaaccaaattttgacaactt 630  Q
    |||||||||||||||||||||||| || |||||||||    
T  33823764 gagaaatgatatttgtacaaccaacttgtgacaactt 33823728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 595 - 631
Target Start/End: Complemental strand, 39032891 - 39032855
Alignment:
Q  595 agaaatgatatttgtacaaccaaattttgacaacttt 631  Q
    ||||||||||||||||||| |||||||| ||||||||    
T  39032891 agaaatgatatttgtacaatcaaattttaacaacttt 39032855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 588 - 616
Target Start/End: Original strand, 40829408 - 40829436
Alignment:
Q  588 taaaatgagaaatgatatttgtacaacca 616  Q
    |||||||||||||||||||||||||||||    
T  40829408 taaaatgagaaatgatatttgtacaacca 40829436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 7e-20; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 593 - 672
Target Start/End: Original strand, 4721728 - 4721809
Alignment:
Q  593 tgagaaatgatatttgtacaaccaaattttgacaactttgaaaacaac--tctctctcatactcacatatatttttattctc 672  Q
    |||||||||||||||||||||||||||||||||||||||| | |||||  | |||||||||||||||| | |||||||||||    
T  4721728 tgagaaatgatatttgtacaaccaaattttgacaactttggatacaaccttttctctcatactcacatgtgtttttattctc 4721809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 587 - 672
Target Start/End: Complemental strand, 30170807 - 30170720
Alignment:
Q  587 ctaaaatgagaaatgatatttgtacaaccaaattttgacaactttgaaaacaac--tctctctcatactcacatatatttttattctc 672  Q
    |||||| |||||||||||||||||||||||  |||||||||||||  |||||||  |||||||||||||||||| | |||||||||||    
T  30170807 ctaaaaagagaaatgatatttgtacaaccactttttgacaacttttgaaacaaccatctctctcatactcacatgtgtttttattctc 30170720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 593 - 676
Target Start/End: Original strand, 28434441 - 28434526
Alignment:
Q  593 tgagaaatgatatttgtacaaccaaattttgacaactttgaaaacaa--ctctctctcatactcacatatatttttattctccctc 676  Q
    ||||||||||||||||||||| |||||||||| ||||||| | | ||  |||||||| |||||||||| | |||||||||||||||    
T  28434441 tgagaaatgatatttgtacaatcaaattttgataactttggagataatcctctctcttatactcacatgtgtttttattctccctc 28434526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 594 - 658
Target Start/End: Complemental strand, 26629181 - 26629115
Alignment:
Q  594 gagaaatgatatttgtacaaccaaattttgacaactttgaaaacaa--ctctctctcatactcacat 658  Q
    |||||||||||||||||||||||  |||||||||||||  ||||||  |||||||||||||||||||    
T  26629181 gagaaatgatatttgtacaaccactttttgacaacttttgaaacaaccctctctctcatactcacat 26629115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 598 - 676
Target Start/End: Complemental strand, 37379501 - 37379421
Alignment:
Q  598 aatgatatttgtacaaccaaattttgacaactttgaaaacaac--tctctctcatactcacatatatttttattctccctc 676  Q
    ||||||||||||| |||||  |||||||||||||  |||||||  |||||||||||||||||| |  ||||||||||||||    
T  37379501 aatgatatttgtagaaccactttttgacaacttttgaaacaaccatctctctcatactcacatgtgcttttattctccctc 37379421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 591 - 648
Target Start/End: Original strand, 42652498 - 42652555
Alignment:
Q  591 aatgagaaatgatatttgtacaaccaaattttgacaactttgaaaacaactctctctc 648  Q
    |||||||||||||||||||||||  |||||||||||||||| || |||||| ||||||    
T  42652498 aatgagaaatgatatttgtacaattaaattttgacaacttttaagacaactttctctc 42652555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 594 - 671
Target Start/End: Original strand, 13592766 - 13592845
Alignment:
Q  594 gagaaatgatatttgtacaaccaaattttgacaactttgaaaacaactc--tctctcatactcacatatatttttattct 671  Q
    ||||||||||||||||||| | |  |||||||||||||  |||||||||  |||||||||||||||| | ||||||||||    
T  13592766 gagaaatgatatttgtacacctattttttgacaacttttgaaacaactctatctctcatactcacatgtgtttttattct 13592845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 594 - 672
Target Start/End: Original strand, 7678732 - 7678812
Alignment:
Q  594 gagaaatgatatttgtacaaccaaattttgacaactttgaaaacaa--ctctctctcatactcaca-tatatttttattctc 672  Q
    |||||||||||||||||||||||  ||||||||||||||   ||||   ||||||||||||||||| |||||||||||||||    
T  7678732 gagaaatgatatttgtacaaccactttttgacaactttg-tgacaattttctctctcatactcacattatatttttattctc 7678812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 590 - 672
Target Start/End: Original strand, 21467380 - 21467462
Alignment:
Q  590 aaatgagaaatgatatttgtacaaccaaattttgacaactttgaaaacaactctctctcatactcacatatatttttattctc 672  Q
    |||||||||||||||||| ||||   |  ||||||||||||| |||||||   |||||||||||||||| | |||||||||||    
T  21467380 aaatgagaaatgatatttatacatttattttttgacaacttttaaaacaatcatctctcatactcacatgtgtttttattctc 21467462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 592 - 648
Target Start/End: Complemental strand, 8835943 - 8835887
Alignment:
Q  592 atgagaaatgatatttgtacaaccaaattttgacaactttgaaaacaactctctctc 648  Q
    |||||||||||||||||||| | ||  ||||||||||||| |||||||| |||||||    
T  8835943 atgagaaatgatatttgtacgatcactttttgacaacttttaaaacaaccctctctc 8835887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 592 - 631
Target Start/End: Complemental strand, 9047132 - 9047093
Alignment:
Q  592 atgagaaatgatatttgtacaaccaaattttgacaacttt 631  Q
    |||||||||||||||||||||||||  |||||||||||||    
T  9047132 atgagaaatgatatttgtacaaccactttttgacaacttt 9047093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 592 - 631
Target Start/End: Complemental strand, 30943912 - 30943873
Alignment:
Q  592 atgagaaatgatatttgtacaaccaaattttgacaacttt 631  Q
    |||||||||||||||||||||||||| |||| ||||||||    
T  30943912 atgagaaatgatatttgtacaaccaatttttaacaacttt 30943873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 589 - 635
Target Start/End: Original strand, 13885770 - 13885816
Alignment:
Q  589 aaaatgagaaatgatatttgtacaaccaaattttgacaactttgaaa 635  Q
    |||| ||||||||||||||||| |||||| |||||||||||| ||||    
T  13885770 aaaaagagaaatgatatttgtataaccaatttttgacaacttagaaa 13885816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 589 - 631
Target Start/End: Original strand, 20288528 - 20288570
Alignment:
Q  589 aaaatgagaaatgatatttgtacaaccaaattttgacaacttt 631  Q
    |||| |||||||||||||||||||||||| || ||||||||||    
T  20288528 aaaaagagaaatgatatttgtacaaccaatttgtgacaacttt 20288570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 589 - 631
Target Start/End: Original strand, 21075157 - 21075199
Alignment:
Q  589 aaaatgagaaatgatatttgtacaaccaaattttgacaacttt 631  Q
    |||| |||||||||||||||||||||||| || ||||||||||    
T  21075157 aaaaagagaaatgatatttgtacaaccaatttgtgacaacttt 21075199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 590 - 631
Target Start/End: Complemental strand, 5601062 - 5601021
Alignment:
Q  590 aaatgagaaatgatatttgtacaaccaaattttgacaacttt 631  Q
    ||||||||||||||||||| |||||||  |||||||||||||    
T  5601062 aaatgagaaatgatatttgaacaaccattttttgacaacttt 5601021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 590 - 631
Target Start/End: Original strand, 5639558 - 5639599
Alignment:
Q  590 aaatgagaaatgatatttgtacaaccaaattttgacaacttt 631  Q
    ||||||||||||||||||| |||||||  |||||||||||||    
T  5639558 aaatgagaaatgatatttgaacaaccattttttgacaacttt 5639599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 594 - 631
Target Start/End: Complemental strand, 5740845 - 5740808
Alignment:
Q  594 gagaaatgatatttgtacaaccaaattttgacaacttt 631  Q
    |||||||||||||||||||||||  |||||||||||||    
T  5740845 gagaaatgatatttgtacaaccactttttgacaacttt 5740808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 594 - 631
Target Start/End: Original strand, 12659052 - 12659089
Alignment:
Q  594 gagaaatgatatttgtacaaccaaattttgacaacttt 631  Q
    |||||||||||||||||||||||| |||| ||||||||    
T  12659052 gagaaatgatatttgtacaaccaatttttaacaacttt 12659089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 596 - 658
Target Start/End: Complemental strand, 21649000 - 21648937
Alignment:
Q  596 gaaatgatatttgtacaaccaaattttgacaactttgaaaacaac--tctctctcatactcacat 658  Q
    |||||||||||||||||||||| || ||||||||||   ||||||  ||||||||||||||||||    
T  21649000 gaaatgatatttgtacaaccaatttgtgacaacttt-ttaacaactttctctctcatactcacat 21648937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 594 - 631
Target Start/End: Complemental strand, 37392188 - 37392151
Alignment:
Q  594 gagaaatgatatttgtacaaccaaattttgacaacttt 631  Q
    |||||||||||||||||||||||  |||||||||||||    
T  37392188 gagaaatgatatttgtacaaccattttttgacaacttt 37392151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 595 - 631
Target Start/End: Original strand, 895935 - 895971
Alignment:
Q  595 agaaatgatatttgtacaaccaaattttgacaacttt 631  Q
    ||||||||||||||||||||||  |||||||||||||    
T  895935 agaaatgatatttgtacaaccactttttgacaacttt 895971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 594 - 630
Target Start/End: Original strand, 1065417 - 1065453
Alignment:
Q  594 gagaaatgatatttgtacaaccaaattttgacaactt 630  Q
    |||||||||||||||||||||||| || |||||||||    
T  1065417 gagaaatgatatttgtacaaccaatttgtgacaactt 1065453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 594 - 646
Target Start/End: Complemental strand, 5772043 - 5771991
Alignment:
Q  594 gagaaatgatatttgtacaaccaaattttgacaactttgaaaacaactctctc 646  Q
    ||||||||||||||| |||||||  |||||||||||||   ||||||||||||    
T  5772043 gagaaatgatatttgaacaaccattttttgacaacttttgtaacaactctctc 5771991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 594 - 659
Target Start/End: Original strand, 7376506 - 7376572
Alignment:
Q  594 gagaaatgatatttgtacaaccaaattttgacaactttgaaaacaac--tctctctcatactcacata 659  Q
    |||||||||||||||||||||||| || | ||||||||   ||||||  |||||||||||||||||||    
T  7376506 gagaaatgatatttgtacaaccaatttctaacaacttt-tgaacaactttctctctcatactcacata 7376572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 2e-17; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 594 - 672
Target Start/End: Complemental strand, 31227621 - 31227543
Alignment:
Q  594 gagaaatgatatttgtacaaccaaattttgacaactttgaaaacaactctctctcatactcacatatatttttattctc 672  Q
    |||||||||||| ||||||| ||  |||||||||||||  ||||||||||||||||||||||||| | |||||||||||    
T  31227621 gagaaatgatatgtgtacaatcactttttgacaacttttgaaacaactctctctcatactcacatgtttttttattctc 31227543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 589 - 671
Target Start/End: Original strand, 28481776 - 28481858
Alignment:
Q  589 aaaatgagaaatgatatttgtacaaccaaattttgacaactttgaaaacaactctctctcatactcacatatatttttattct 671  Q
    |||| ||||||| ||||||| |||||||  |||||||||||||   |||||||||||||||||||||||| | ||||||||||    
T  28481776 aaaaagagaaataatatttgaacaaccattttttgacaacttttggaacaactctctctcatactcacatgtgtttttattct 28481858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 594 - 667
Target Start/End: Complemental strand, 24727661 - 24727586
Alignment:
Q  594 gagaaatgatatttgtacaaccaaattttgacaactttgaaaaca--actctctctcatactcacatatattttta 667  Q
    |||||||||||||||||||||||  |||||||||||||  |||||  ||||||||||||| |||||||| ||||||    
T  24727661 gagaaatgatatttgtacaaccactttttgacaacttttgaaacaacactctctctcatattcacatatgttttta 24727586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 593 - 673
Target Start/End: Complemental strand, 40874333 - 40874251
Alignment:
Q  593 tgagaaatgatatttgtacaaccaaattttgacaactttgaaaacaac--tctctctcatactcacatatatttttattctcc 673  Q
    ||||||||||||||||||||||||  |||| ||||||||  |||||||  | ||||||||||||||||||  |||||||||||    
T  40874333 tgagaaatgatatttgtacaaccattttttaacaacttttgaaacaaccatgtctctcatactcacatatgcttttattctcc 40874251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 589 - 672
Target Start/End: Original strand, 22966781 - 22966866
Alignment:
Q  589 aaaatgagaaatgatatttgtacaaccaaattttgacaactttgaaaacaa--ctctctctcatactcacatatatttttattctc 672  Q
    |||| |||||||||||||||||||||||  |||||| ||||||  ||||||  |||||||||||| |||||| | |||||||||||    
T  22966781 aaaaagagaaatgatatttgtacaaccactttttgataacttttgaaacaaccctctctctcatattcacatgtgtttttattctc 22966866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 593 - 672
Target Start/End: Original strand, 25507254 - 25507337
Alignment:
Q  593 tgagaaatgatatttgtacaaccaaattttgacaactttgaaaacaa----ctctctctcatactcacatatatttttattctc 672  Q
    ||||||||||||||||||||||||  |||||||||||||  ||||||    ||||||||| ||||||||| || ||||||||||    
T  25507254 tgagaaatgatatttgtacaaccactttttgacaacttttgaaacaaccctctctctctcgtactcacatgtaattttattctc 25507337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 594 - 672
Target Start/End: Complemental strand, 13454026 - 13453946
Alignment:
Q  594 gagaaatgatatttgtacaaccaaattttgacaactttgaaaacaa--ctctctctcatactcacatatatttttattctc 672  Q
    |||||||||||| ||||||| ||  |||||||||||||  ||||||  ||||||||||||||||||| | |||||||||||    
T  13454026 gagaaatgatatctgtacaatcactttttgacaacttttgaaacaattctctctctcatactcacatgtgtttttattctc 13453946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 594 - 672
Target Start/End: Complemental strand, 43820812 - 43820732
Alignment:
Q  594 gagaaatgatatttgtacaaccaaattttgacaactttgaaaacaac--tctctctcatactcacatatatttttattctc 672  Q
    |||||||||||||||||||| ||  |||| ||||||||  |||||||  ||| |||||||||||||||| |||||||||||    
T  43820812 gagaaatgatatttgtacaatcatttttttacaacttttgaaacaaccatctttctcatactcacatatttttttattctc 43820732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 597 - 670
Target Start/End: Complemental strand, 40602458 - 40602383
Alignment:
Q  597 aaatgatatttgtacaaccaaattttgacaactttgaaaacaac--tctctctcatactcacatatatttttattc 670  Q
    ||||||||||||||||||||  ||||||||||||  ||| ||||  ||| |||||||||||||||| |||||||||    
T  40602458 aaatgatatttgtacaaccactttttgacaacttataaagcaaccttctatctcatactcacatatgtttttattc 40602383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 590 - 658
Target Start/End: Complemental strand, 23690585 - 23690515
Alignment:
Q  590 aaatgagaaatgatatttgtacaaccaaattttgacaactttgaaaacaac--tctctctcatactcacat 658  Q
    ||||||||||||||||| |||||||||  ||||||||||||| |  |||||  ||||||||||||||||||    
T  23690585 aaatgagaaatgatattagtacaaccactttttgacaacttttatgacaactttctctctcatactcacat 23690515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 592 - 672
Target Start/End: Original strand, 31629602 - 31629684
Alignment:
Q  592 atgagaaatgatatttgtacaaccaaattttgacaactttgaaaacaac--tctctctcatactcacatatatttttattctc 672  Q
    ||||||||||||||||||||||| |  |||||||||||||   ||||||  ||||||| |||||||||| | |||||||||||    
T  31629602 atgagaaatgatatttgtacaactactttttgacaacttttggaacaaccatctctctaatactcacatgtgtttttattctc 31629684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 588 - 658
Target Start/End: Original strand, 7438562 - 7438632
Alignment:
Q  588 taaaatgagaaatgatatttgtacaaccaaattttgacaactttgaaaacaactctctctcatactcacat 658  Q
    ||||| ||||||||||||||| |||||||  |||  |||||||| |  |||||||||||||||||||||||    
T  7438562 taaaaagagaaatgatatttgaacaaccatttttaaacaacttttatgacaactctctctcatactcacat 7438632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 592 - 658
Target Start/End: Complemental strand, 15124009 - 15123941
Alignment:
Q  592 atgagaaatgatatttgtacaaccaaattttgacaactttgaaaacaa--ctctctctcatactcacat 658  Q
    |||||||||||||||||||||||||  |||||||||||||  ||||||   | ||||||||||||||||    
T  15124009 atgagaaatgatatttgtacaaccattttttgacaacttttgaaacaatcatatctctcatactcacat 15123941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 588 - 658
Target Start/End: Original strand, 30856801 - 30856872
Alignment:
Q  588 taaaatgagaaatgatatttgtacaaccaaattttgacaactttgaaaacaac--tctctctcatactcacat 658  Q
    |||||||||||||||||||||||||||||  || ||||||||||  | |||||  ||||||||||||||||||    
T  30856801 taaaatgagaaatgatatttgtacaaccactttgtgacaacttt-tagacaactttctctctcatactcacat 30856872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 597 - 656
Target Start/End: Original strand, 9365923 - 9365982
Alignment:
Q  597 aaatgatatttgtacaaccaaattttgacaactttgaaaacaactctctctcatactcac 656  Q
    |||| ||||||||||||| |  ||||||||| ||| ||||||||||||||||||| ||||    
T  9365923 aaataatatttgtacaactattttttgacaatttttaaaacaactctctctcatattcac 9365982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 592 - 631
Target Start/End: Complemental strand, 25801875 - 25801836
Alignment:
Q  592 atgagaaatgatatttgtacaaccaaattttgacaacttt 631  Q
    |||||||||||||||||||||||||| || ||||||||||    
T  25801875 atgagaaatgatatttgtacaaccaatttgtgacaacttt 25801836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 594 - 628
Target Start/End: Complemental strand, 2308393 - 2308359
Alignment:
Q  594 gagaaatgatatttgtacaaccaaattttgacaac 628  Q
    |||||||||||||||||||||||| ||||||||||    
T  2308393 gagaaatgatatttgtacaaccaatttttgacaac 2308359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 593 - 631
Target Start/End: Complemental strand, 30487541 - 30487503
Alignment:
Q  593 tgagaaatgatatttgtacaaccaaattttgacaacttt 631  Q
    ||||||||||||||||||||||||| || ||||||||||    
T  30487541 tgagaaatgatatttgtacaaccaatttgtgacaacttt 30487503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 593 - 631
Target Start/End: Complemental strand, 45376293 - 45376255
Alignment:
Q  593 tgagaaatgatatttgtacaaccaaattttgacaacttt 631  Q
    ||||||||||||||||||||||||  |||||||||||||    
T  45376293 tgagaaatgatatttgtacaaccactttttgacaacttt 45376255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 594 - 631
Target Start/End: Original strand, 28013967 - 28014004
Alignment:
Q  594 gagaaatgatatttgtacaaccaaattttgacaacttt 631  Q
    ||||||| |||||||||||||||| |||||||||||||    
T  28013967 gagaaattatatttgtacaaccaatttttgacaacttt 28014004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 594 - 631
Target Start/End: Original strand, 29168725 - 29168762
Alignment:
Q  594 gagaaatgatatttgtacaaccaaattttgacaacttt 631  Q
    |||||||||||||||||||||||  |||||||||||||    
T  29168725 gagaaatgatatttgtacaaccattttttgacaacttt 29168762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 594 - 672
Target Start/End: Complemental strand, 29472101 - 29472022
Alignment:
Q  594 gagaaatgatatttgtacaaccaaattttgacaactttgaaaacaactc--tctctcatactcacatatatttttattctc 672  Q
    ||||||||||||||||| || ||  |||||||||||||  ||||||| |  |||||||||||||||| | |||||||||||    
T  29472101 gagaaatgatatttgtaaaatcac-ttttgacaacttttgaaacaaccccctctctcatactcacatgtgtttttattctc 29472022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 594 - 631
Target Start/End: Original strand, 37966367 - 37966404
Alignment:
Q  594 gagaaatgatatttgtacaaccaaattttgacaacttt 631  Q
    |||||||||||||||||||||||| || ||||||||||    
T  37966367 gagaaatgatatttgtacaaccaatttgtgacaacttt 37966404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 594 - 672
Target Start/End: Original strand, 40106609 - 40106689
Alignment:
Q  594 gagaaatgatatttgtacaaccaaattttgacaactttgaaaacaac--tctctctcatactcacatatatttttattctc 672  Q
    |||||||||||||||||||||||   |||||||||||   |||||||  ||||||||||||| ||||   |||||||||||    
T  40106609 gagaaatgatatttgtacaaccactctttgacaacttatgaaacaaccatctctctcatacttacatgcgtttttattctc 40106689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 641 - 669
Target Start/End: Complemental strand, 2842903 - 2842875
Alignment:
Q  641 tctctctcatactcacatatatttttatt 669  Q
    |||||||||||||||||||||||||||||    
T  2842903 tctctctcatactcacatatatttttatt 2842875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 607 - 672
Target Start/End: Complemental strand, 15610890 - 15610823
Alignment:
Q  607 tgtacaaccaaattttgacaactttgaaaacaactctctct--catactcacatatatttttattctc 672  Q
    ||||||||||  |||||||||||||  ||||||| ||||||  ||||||||||| | |||||||||||    
T  15610890 tgtacaaccattttttgacaacttttgaaacaaccctctctatcatactcacatgtttttttattctc 15610823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 597 - 672
Target Start/End: Complemental strand, 13140369 - 13140294
Alignment:
Q  597 aaatgatatttgtacaaccaaattttgacaactttgaaaacaactctctctcatactcacatatatttttattctc 672  Q
    |||||||||||||||| | |  |||||||||||||  ||||||||||||||||||||||||| | |||||||||||    
T  13140369 aaatgatatttgtacatctattttttgacaacttttgaaacaactctctctcatactcacatgtgtttttattctc 13140294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 593 - 648
Target Start/End: Complemental strand, 44121304 - 44121249
Alignment:
Q  593 tgagaaatgatatttgtacaaccaaattttgacaactttgaaaacaactctctctc 648  Q
    ||||||||||||||||||||||||||||||||||| |||| | |||||||||||||    
T  44121304 tgagaaatgatatttgtacaaccaaattttgacaattttggagacaactctctctc 44121249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 594 - 648
Target Start/End: Original strand, 22786661 - 22786715
Alignment:
Q  594 gagaaatgatatttgtacaaccaaattttgacaactttgaaaacaactctctctc 648  Q
    ||||||||||||||||||||| ||||||||||||||||||| ||  |||||||||    
T  22786661 gagaaatgatatttgtacaactaaattttgacaactttgaagacctctctctctc 22786715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 593 - 672
Target Start/End: Original strand, 56215604 - 56215685
Alignment:
Q  593 tgagaaatgatatttgtacaaccaaattttgacaactttgaaaacaa--ctctctctcatactcacatatatttttattctc 672  Q
    ||||||||||||||||||||||||  |||||||||||||  || |||   |||||||||||||||||| | |||||||||||    
T  56215604 tgagaaatgatatttgtacaaccactttttgacaacttttgaaccaatcatctctctcatactcacatgtgtttttattctc 56215685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 594 - 672
Target Start/End: Original strand, 25539862 - 25539940
Alignment:
Q  594 gagaaatgatatttgtacaaccaaattttgacaactttgaaaacaactctctctcatactcaca-tatatttttattctc 672  Q
    |||||||||||||||||| ||||| || | ||||||||  | |||||||||||||||||||| | |||||||||||||||    
T  25539862 gagaaatgatatttgtaccaccaatttctaacaacttt-tagacaactctctctcatactcatattatatttttattctc 25539940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 598 - 672
Target Start/End: Original strand, 40293244 - 40293318
Alignment:
Q  598 aatgatatttgtacaaccaaattttgacaactttgaaaacaactctctctcatactcacatatatttttattctc 672  Q
    ||||||||||||||| | |  ||||||||| |||  ||||||| ||||||||||||||||| | |||||||||||    
T  40293244 aatgatatttgtacatcaattttttgacaatttttgaaacaaccctctctcatactcacatgtgtttttattctc 40293318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 594 - 676
Target Start/End: Original strand, 51957519 - 51957601
Alignment:
Q  594 gagaaatgatatttgtacaaccaaattttgacaactttgaaaacaactctctctcatactcacatatatttttattctccctc 676  Q
    ||||||||||||||||||||| |  |||| |||| | |  ||| ||||||||||  ||||||||| |||||||||||||||||    
T  51957519 gagaaatgatatttgtacaactactttttaacaattattgaaataactctctcttttactcacatgtatttttattctccctc 51957601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 595 - 672
Target Start/End: Original strand, 17367446 - 17367523
Alignment:
Q  595 agaaatgatatttgtacaaccaaattttgacaactttgaaaacaac--tctctctcatactcacatatatttttattctc 672  Q
    ||||||||||||| ||||||||  |||||||||||||  |||||||  |||||||||||||  ||||| |||||||||||    
T  17367446 agaaatgatatttatacaaccactttttgacaacttttgaaacaaccatctctctcatact--catatttttttattctc 17367523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 594 - 672
Target Start/End: Complemental strand, 32058446 - 32058366
Alignment:
Q  594 gagaaatgatatttgtacaaccaaattttgacaactttgaaaacaa--ctctctctcatactcacatatatttttattctc 672  Q
    ||||||| ||||||||||| |||||| ||||||| |||| | ||||  || |||||||||||||||| | |||||||||||    
T  32058446 gagaaattatatttgtacagccaaatcttgacaattttggagacaaccctttctctcatactcacatgtgtttttattctc 32058366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 594 - 672
Target Start/End: Original strand, 35206168 - 35206248
Alignment:
Q  594 gagaaatgatatttgtacaaccaaattttgacaactttgaaaacaactctctctc--atactcacatatatttttattctc 672  Q
    |||||||||| ||||||||| ||  |||||| ||||||  |||||||||||||||  |||||||||| | |||||||||||    
T  35206168 gagaaatgatgtttgtacaatcactttttgataacttttgaaacaactctctctcttatactcacatgtgtttttattctc 35206248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 594 - 631
Target Start/End: Complemental strand, 40983123 - 40983086
Alignment:
Q  594 gagaaatgatatttgtacaaccaaattttgacaacttt 631  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  40983123 gagaaatgatatttgtacaaccatattttgacaacttt 40983086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 589 - 658
Target Start/End: Original strand, 54000693 - 54000764
Alignment:
Q  589 aaaatgagaaatgatatttgtacaaccaaattttgacaactttgaaaacaac--tctctctcatactcacat 658  Q
    |||| ||||||||||||||| |||||||  ||||||||| ||| | ||||||  ||||||||||||||||||    
T  54000693 aaaaagagaaatgatatttgaacaaccactttttgacaatttttataacaactttctctctcatactcacat 54000764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 592 - 631
Target Start/End: Complemental strand, 7037557 - 7037518
Alignment:
Q  592 atgagaaatgatatttgtacaaccaaattttgacaacttt 631  Q
    |||||||||||||||||||||||||| || ||||||||||    
T  7037557 atgagaaatgatatttgtacaaccaatttgtgacaacttt 7037518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 593 - 672
Target Start/End: Original strand, 15596395 - 15596476
Alignment:
Q  593 tgagaaatgatatttgtacaaccaaattttgacaactt--tgaaaacaactctctctcatactcaca-tatatttttattctc 672  Q
    ||||||||||||||||||||||||  || |||||||||  ||| |||  |||||||||||||||||| ||| |||||||||||    
T  15596395 tgagaaatgatatttgtacaaccactttgtgacaacttcttgacaact-ctctctctcatactcacattatgtttttattctc 15596476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 592 - 631
Target Start/End: Original strand, 32012894 - 32012933
Alignment:
Q  592 atgagaaatgatatttgtacaaccaaattttgacaacttt 631  Q
    ||||||||||||||||| |||||||| |||||||||||||    
T  32012894 atgagaaatgatatttgaacaaccaatttttgacaacttt 32012933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 594 - 658
Target Start/End: Complemental strand, 44272881 - 44272816
Alignment:
Q  594 gagaaatgatatttgtacaaccaaattttgacaactttgaaaacaac--tctctctcatactcacat 658  Q
    ||||||||||||||||||||| |  |||||||||||||  |||||||  ||||||||||||||||||    
T  44272881 gagaaatgatatttgtacaactattttttgacaacttt-taaacaactttctctctcatactcacat 44272816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 594 - 658
Target Start/End: Complemental strand, 50831827 - 50831761
Alignment:
Q  594 gagaaatgatatttgtacaaccaaattttgacaactttgaaaacaac--tctctctcatactcacat 658  Q
    |||||||||||||||||||||||  |||||||||||||   ||||||  || |||||||||||||||    
T  50831827 gagaaatgatatttgtacaaccactttttgacaacttttgtaacaactttccctctcatactcacat 50831761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 589 - 631
Target Start/End: Original strand, 9032775 - 9032817
Alignment:
Q  589 aaaatgagaaatgatatttgtacaaccaaattttgacaacttt 631  Q
    ||||||||||||||||||||||||| ||| || ||||||||||    
T  9032775 aaaatgagaaatgatatttgtacaatcaatttgtgacaacttt 9032817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 593 - 631
Target Start/End: Original strand, 23220334 - 23220372
Alignment:
Q  593 tgagaaatgatatttgtacaaccaaattttgacaacttt 631  Q
    ||||||||||||||||||||||||  |||||||||||||    
T  23220334 tgagaaatgatatttgtacaaccattttttgacaacttt 23220372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 593 - 631
Target Start/End: Complemental strand, 39241362 - 39241324
Alignment:
Q  593 tgagaaatgatatttgtacaaccaaattttgacaacttt 631  Q
    ||||||||||||||||||||||||| || ||||||||||    
T  39241362 tgagaaatgatatttgtacaaccaatttgtgacaacttt 39241324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 594 - 631
Target Start/End: Original strand, 1796366 - 1796403
Alignment:
Q  594 gagaaatgatatttgtacaaccaaattttgacaacttt 631  Q
    |||||||||||||||||||||||| || ||||||||||    
T  1796366 gagaaatgatatttgtacaaccaatttgtgacaacttt 1796403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 594 - 631
Target Start/End: Original strand, 2109443 - 2109480
Alignment:
Q  594 gagaaatgatatttgtacaaccaaattttgacaacttt 631  Q
    |||||||||||||||||||||||  |||||||||||||    
T  2109443 gagaaatgatatttgtacaaccatcttttgacaacttt 2109480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 594 - 631
Target Start/End: Complemental strand, 5208398 - 5208361
Alignment:
Q  594 gagaaatgatatttgtacaaccaaattttgacaacttt 631  Q
    |||||||||||||||||||||||| || ||||||||||    
T  5208398 gagaaatgatatttgtacaaccaatttgtgacaacttt 5208361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 594 - 672
Target Start/End: Complemental strand, 10762573 - 10762493
Alignment:
Q  594 gagaaatgatatttgtacaaccaaattttgacaactttgaaaacaa--ctctctctcatactcacatatatttttattctc 672  Q
    |||||||||||||| |||||| |  |||||| ||||||  ||||||  |||||| | |||||||||||| |||||||||||    
T  10762573 gagaaatgatatttatacaactactttttgataacttttgaaacaattctctcttttatactcacatatgtttttattctc 10762493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 594 - 631
Target Start/End: Original strand, 42490920 - 42490957
Alignment:
Q  594 gagaaatgatatttgtacaaccaaattttgacaacttt 631  Q
    |||||||||||||||||||||||  |||||||||||||    
T  42490920 gagaaatgatatttgtacaaccactttttgacaacttt 42490957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 594 - 631
Target Start/End: Complemental strand, 50721816 - 50721779
Alignment:
Q  594 gagaaatgatatttgtacaaccaaattttgacaacttt 631  Q
    ||||||||||||||| |||||||| |||||||||||||    
T  50721816 gagaaatgatatttgaacaaccaatttttgacaacttt 50721779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 594 - 631
Target Start/End: Complemental strand, 51377364 - 51377327
Alignment:
Q  594 gagaaatgatatttgtacaaccaaattttgacaacttt 631  Q
    |||||||||||||||||||||||| || ||||||||||    
T  51377364 gagaaatgatatttgtacaaccaatttgtgacaacttt 51377327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 594 - 631
Target Start/End: Complemental strand, 55268072 - 55268035
Alignment:
Q  594 gagaaatgatatttgtacaaccaaattttgacaacttt 631  Q
    |||||||||||||||||||||||| || ||||||||||    
T  55268072 gagaaatgatatttgtacaaccaatttgtgacaacttt 55268035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 594 - 630
Target Start/End: Complemental strand, 27001480 - 27001444
Alignment:
Q  594 gagaaatgatatttgtacaaccaaattttgacaactt 630  Q
    |||||||||||||||||||||||| || |||||||||    
T  27001480 gagaaatgatatttgtacaaccaatttgtgacaactt 27001444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 594 - 630
Target Start/End: Complemental strand, 51717353 - 51717317
Alignment:
Q  594 gagaaatgatatttgtacaaccaaattttgacaactt 630  Q
    |||||||||||||||||||||||| || |||||||||    
T  51717353 gagaaatgatatttgtacaaccaatttgtgacaactt 51717317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 593 - 669
Target Start/End: Complemental strand, 39284739 - 39284663
Alignment:
Q  593 tgagaaatgatatttgtacaaccaaattttgacaactttgaaaacaactctctctcatactcacatatatttttatt 669  Q
    |||||||||||||||||| |  ||  |||||||||||||  |||||||||||||||||||||| || ||||||||||    
T  39284739 tgagaaatgatatttgtatattcactttttgacaacttttgaaacaactctctctcatactcatatgtatttttatt 39284663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 594 - 672
Target Start/End: Complemental strand, 9327056 - 9326976
Alignment:
Q  594 gagaaatgatatttgtacaaccaaattttgacaactttgaaaacaac--tctctctcatactcacatatatttttattctc 672  Q
    |||||||||||||||||||| ||| ||| |||||||||  |||||||  ||| |||||||||||||| | |||||||||||    
T  9327056 gagaaatgatatttgtacaatcaattttcgacaacttttgaaacaaccatctatctcatactcacatgtctttttattctc 9326976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 597 - 672
Target Start/End: Original strand, 11323912 - 11323987
Alignment:
Q  597 aaatgatatttgtacaaccaaattttgacaactttgaaaacaactctctctcatactcacatatatttttattctc 672  Q
    ||||||||||||||||||||  |||| ||||||||  | ||||||||||||||||||  ||| | |||||||||||    
T  11323912 aaatgatatttgtacaaccactttttaacaacttttgatacaactctctctcatacttccatgtgtttttattctc 11323987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 596 - 656
Target Start/End: Original strand, 41850945 - 41851007
Alignment:
Q  596 gaaatgatatttgtacaaccaaattttgacaactttgaaaacaa--ctctctctcatactcac 656  Q
    ||||||||||||||||||||| ||||||||||||||  ||||||  ||| |||||||||||||    
T  41850945 gaaatgatatttgtacaaccatattttgacaacttttgaaacaaccctccctctcatactcac 41851007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 594 - 672
Target Start/End: Complemental strand, 19623323 - 19623243
Alignment:
Q  594 gagaaatgatatttgtacaaccaaattttgacaactttgaaaaca--actctctctcatactcacatatatttttattctc 672  Q
    |||||||||||||||||||| ||  |||||| |||||| ||||||  | ||||||||||||| |||| | |||||||||||    
T  19623323 gagaaatgatatttgtacaatcactttttgataacttttaaaacaataatctctctcatacttacatgtctttttattctc 19623243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 593 - 671
Target Start/End: Original strand, 41442171 - 41442251
Alignment:
Q  593 tgagaaatgatatttgtacaaccaaattttgacaactttgaaaacaac--tctctctcatactcacatatatttttattct 671  Q
    ||||||||| ||||||||||||||  |||||| |||||| | ||||||  |||||||||||||||||| | ||| ||||||    
T  41442171 tgagaaatggtatttgtacaaccattttttgataacttttacaacaaccttctctctcatactcacatgtttttatattct 41442251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 594 - 658
Target Start/End: Complemental strand, 3069645 - 3069581
Alignment:
Q  594 gagaaatgatatttgtacaaccaaattttgacaactttgaaaacaactctctctcatactcacat 658  Q
    |||||||||||||||||||||||| || ||||||||||| | |    ||||||||||||||||||    
T  3069645 gagaaatgatatttgtacaaccaatttgtgacaactttgtacaactttctctctcatactcacat 3069581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 593 - 658
Target Start/End: Complemental strand, 32457827 - 32457761
Alignment:
Q  593 tgagaaatgatatttgtacaaccaaattttgacaactttgaaaacaac--tctctctcatactcacat 658  Q
    ||||||||||||||||||||||||  ||||||||||||||   |||||  ||||||||||||||||||    
T  32457827 tgagaaatgatatttgtacaaccactttttgacaactttg-tgacaactttctctctcatactcacat 32457761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 619 - 672
Target Start/End: Original strand, 37073685 - 37073740
Alignment:
Q  619 ttttgacaactttgaaaacaac--tctctctcatactcacatatatttttattctc 672  Q
    |||||||||||||  |||||||  ||||||||||| ||||||||||||||||||||    
T  37073685 ttttgacaacttttgaaacaacattctctctcatattcacatatatttttattctc 37073740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 594 - 658
Target Start/End: Complemental strand, 36869908 - 36869843
Alignment:
Q  594 gagaaatgatatttgtacaaccaaattttgacaactttgaaaacaac--tctctctcatactcacat 658  Q
    |||||||||||||||||||||||  |||||||||||||  | |||||  ||||||||||||||||||    
T  36869908 gagaaatgatatttgtacaaccattttttgacaacttt-tagacaactttctctctcatactcacat 36869843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 594 - 658
Target Start/End: Complemental strand, 41448247 - 41448181
Alignment:
Q  594 gagaaatgatatttgtacaaccaaattttgacaactttgaaaacaa--ctctctctcatactcacat 658  Q
    |||||||||||||||||||||||  |||  ||||||||  ||||||  |||||||||||||||||||    
T  41448247 gagaaatgatatttgtacaaccatttttaaacaacttttgaaacaaccctctctctcatactcacat 41448181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 594 - 658
Target Start/End: Original strand, 48405410 - 48405476
Alignment:
Q  594 gagaaatgatatttgtacaaccaaattttgacaactttgaaaacaac--tctctctcatactcacat 658  Q
    |||||||||||||||||||||||  || ||||||||||   ||||||  ||||||||||||||||||    
T  48405410 gagaaatgatatttgtacaaccattttgtgacaacttttgtaacaactttctctctcatactcacat 48405476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 592 - 631
Target Start/End: Original strand, 50879593 - 50879632
Alignment:
Q  592 atgagaaatgatatttgtacaaccaaattttgacaacttt 631  Q
    ||||||||||||||||||||||| ||||| ||||||||||    
T  50879593 atgagaaatgatatttgtacaactaaattgtgacaacttt 50879632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 589 - 627
Target Start/End: Complemental strand, 9719517 - 9719479
Alignment:
Q  589 aaaatgagaaatgatatttgtacaaccaaattttgacaa 627  Q
    ||||||||||||||||||||||||||||  |||||||||    
T  9719517 aaaatgagaaatgatatttgtacaaccactttttgacaa 9719479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 594 - 648
Target Start/End: Complemental strand, 38017998 - 38017944
Alignment:
Q  594 gagaaatgatatttgtacaaccaaattttgacaactttgaaaacaactctctctc 648  Q
    |||||||||||||||||||||||   |||||||||||   |||||||||||||||    
T  38017998 gagaaatgatatttgtacaaccactctttgacaacttatgaaacaactctctctc 38017944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 585 - 631
Target Start/End: Complemental strand, 52454174 - 52454128
Alignment:
Q  585 aactaaaatgagaaatgatatttgtacaaccaaattttgacaacttt 631  Q
    |||||||| |||||||||||||||||||| ||| || ||||||||||    
T  52454174 aactaaaaagagaaatgatatttgtacaatcaatttgtgacaacttt 52454128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 591 - 672
Target Start/End: Complemental strand, 462475 - 462392
Alignment:
Q  591 aatgagaaatgatatttgtacaaccaaattttgacaactttgaaaacaac--tctctctcatactcac-atatatttttattctc 672  Q
    ||||||||||||||||||||||||||  || ||||||||||  | |||||  ||||||||||||||||  |||||| ||||||||    
T  462475 aatgagaaatgatatttgtacaaccattttgtgacaacttt-tagacaactttctctctcatactcacgttatattcttattctc 462392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 590 - 631
Target Start/End: Complemental strand, 19418232 - 19418191
Alignment:
Q  590 aaatgagaaatgatatttgtacaaccaaattttgacaacttt 631  Q
    |||||||||||||||||||||||||||  || ||||||||||    
T  19418232 aaatgagaaatgatatttgtacaaccattttatgacaacttt 19418191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 594 - 672
Target Start/End: Original strand, 31143270 - 31143350
Alignment:
Q  594 gagaaatgatatttgtacaaccaaattttgacaactttgaaaacaa--ctctctctcatactcacatatatttttattctc 672  Q
    ||||| |||||||||||||| ||  |||||||||||||  ||||||   ||||||| |||||||||| | |||||||||||    
T  31143270 gagaagtgatatttgtacaatcattttttgacaacttttgaaacaatcatctctctaatactcacatgtgtttttattctc 31143350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 594 - 631
Target Start/End: Complemental strand, 32931989 - 32931952
Alignment:
Q  594 gagaaatgatatttgtacaaccaaattttgacaacttt 631  Q
    |||||||||||||||||||||||| || ||||||||||    
T  32931989 gagaaatgatatttgtacaaccaatttgtgacaacttt 32931952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 594 - 631
Target Start/End: Original strand, 36818956 - 36818993
Alignment:
Q  594 gagaaatgatatttgtacaaccaaattttgacaacttt 631  Q
    |||||||||||||||||||||||| || ||||||||||    
T  36818956 gagaaatgatatttgtacaaccaatttgtgacaacttt 36818993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 589 - 658
Target Start/End: Complemental strand, 1902002 - 1901932
Alignment:
Q  589 aaaatgagaaatgatatttgtacaaccaaattttgacaactttgaaaacaac--tctctctcatactcacat 658  Q
    |||| |||||||||||||||||||||||  || ||||||||||  | |||||  ||||||||||||||||||    
T  1902002 aaaaagagaaatgatatttgtacaaccactttgtgacaacttt-tagacaactttctctctcatactcacat 1901932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 589 - 658
Target Start/End: Complemental strand, 1911448 - 1911378
Alignment:
Q  589 aaaatgagaaatgatatttgtacaaccaaattttgacaactttgaaaacaac--tctctctcatactcacat 658  Q
    |||| |||||||||||||||||||||||  || ||||||||||  | |||||  ||||||||||||||||||    
T  1911448 aaaaagagaaatgatatttgtacaaccactttgtgacaacttt-tagacaactttctctctcatactcacat 1911378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 594 - 630
Target Start/End: Original strand, 20714243 - 20714279
Alignment:
Q  594 gagaaatgatatttgtacaaccaaattttgacaactt 630  Q
    |||||||||||||||||||||||| || |||||||||    
T  20714243 gagaaatgatatttgtacaaccaatttgtgacaactt 20714279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 588 - 658
Target Start/End: Original strand, 16658432 - 16658503
Alignment:
Q  588 taaaatgagaaatgatatttgtacaaccaaattttgacaactttgaaaacaac--tctctctcatactcacat 658  Q
    ||||||||||||||||||||||||||||| ||| ||||||||||  | |||||  ||||||||||||||||||    
T  16658432 taaaatgagaaatgatatttgtacaaccacattgtgacaacttt-tagacaactttctctctcatactcacat 16658503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 584 - 631
Target Start/End: Original strand, 9987941 - 9987988
Alignment:
Q  584 caactaaaatgagaaatgatatttgtacaaccaaattttgacaacttt 631  Q
    ||||||||| ||||||||||||||| |||||||| |||||||||||||    
T  9987941 caactaaaaagagaaatgatatttgaacaaccaatttttgacaacttt 9987988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 594 - 672
Target Start/End: Complemental strand, 35883678 - 35883598
Alignment:
Q  594 gagaaatgatatttgtacaaccaaattttgacaactttgaaaacaac--tctctctcatactcacatatatttttattctc 672  Q
    ||||||||||||||||||||  |  |||||||||||||  |||||||  | |||||||||||||||| | |||||||||||    
T  35883678 gagaaatgatatttgtacaattattttttgacaacttttgaaacaaccatatctctcatactcacatgtgtttttattctc 35883598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 594 - 646
Target Start/End: Complemental strand, 33694272 - 33694220
Alignment:
Q  594 gagaaatgatatttgtacaaccaaattttgacaactttgaaaacaactctctc 646  Q
    |||||||||||||||||||| ||  |||| |||||||| ||||||||||||||    
T  33694272 gagaaatgatatttgtacaatcactttttaacaacttttaaaacaactctctc 33694220  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 591 - 630
Target Start/End: Original strand, 13813555 - 13813594
Alignment:
Q  591 aatgagaaatgatatttgtacaaccaaattttgacaactt 630  Q
    ||||||||||||||||||||||||||| || |||||||||    
T  13813555 aatgagaaatgatatttgtacaaccaatttgtgacaactt 13813594  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 593 - 672
Target Start/End: Complemental strand, 20288412 - 20288330
Alignment:
Q  593 tgagaaatgatatttgtacaaccaaattttgacaactttgaaaacaac--tctctctcatactcac-atatatttttattctc 672  Q
    |||||||||||||||||||| |||| || ||||||||||  | |||||  ||||||||||||||||  ||| |||||||||||    
T  20288412 tgagaaatgatatttgtacatccaatttgtgacaactttttagacaactttctctctcatactcacgttatgtttttattctc 20288330  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 594 - 658
Target Start/End: Original strand, 33675900 - 33675965
Alignment:
Q  594 gagaaatgatatttgtacaaccaaattttgacaactttgaaaacaac--tctctctcatactcacat 658  Q
    ||||||||| |||||||||||||  ||||||||||||||  ||||||  ||||||||||||||||||    
T  33675900 gagaaatgacatttgtacaaccactttttgacaactttg-taacaactttctctctcatactcacat 33675965  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 592 - 631
Target Start/End: Complemental strand, 48872090 - 48872051
Alignment:
Q  592 atgagaaatgatatttgtacaaccaaattttgacaacttt 631  Q
    |||||||||||||||||||||||||  |||||||||||||    
T  48872090 atgagaaatgatatttgtacaaccattttttgacaacttt 48872051  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 594 - 665
Target Start/End: Original strand, 25031710 - 25031783
Alignment:
Q  594 gagaaatgatatttgtacaaccaaattttgacaactttgaaaacaa--ctctctctcatactcacatatatttt 665  Q
    ||||||| ||||||||| | | |  ||||||||||||| |||||||  ||||||||||||||||||||| ||||    
T  25031710 gagaaataatatttgtaaatctactttttgacaacttttaaaacaagtctctctctcatactcacatatgtttt 25031783  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 594 - 672
Target Start/End: Complemental strand, 30530645 - 30530565
Alignment:
Q  594 gagaaatgatatttgtacaaccaaattttgacaactttgaaaacaac--tctctctcatactcaca-tatatttttattctc 672  Q
    |||||||||||||| ||||||||  || ||||||||||  | |||||  ||||||||||||||||| |||||||||||||||    
T  30530645 gagaaatgatatttatacaaccattttgtgacaacttt-tagacaactttctctctcatactcacattatatttttattctc 30530565  T

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Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 589 - 631
Target Start/End: Complemental strand, 49020480 - 49020438
Alignment:
Q  589 aaaatgagaaatgatatttgtacaaccaaattttgacaacttt 631  Q
    ||||||||||||||||||||||||||||  |||| ||||||||    
T  49020480 aaaatgagaaatgatatttgtacaaccattttttaacaacttt 49020438  T

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Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 590 - 631
Target Start/End: Original strand, 3672337 - 3672378
Alignment:
Q  590 aaatgagaaatgatatttgtacaaccaaattttgacaacttt 631  Q
    |||||||||||||||||||||| | ||| |||||||||||||    
T  3672337 aaatgagaaatgatatttgtaccatcaatttttgacaacttt 3672378  T

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Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 590 - 631
Target Start/End: Complemental strand, 29362767 - 29362726
Alignment:
Q  590 aaatgagaaatgatatttgtacaaccaaattttgacaacttt 631  Q
    |||||||||||||||||||||||| ||| || ||||||||||    
T  29362767 aaatgagaaatgatatttgtacaatcaatttatgacaacttt 29362726  T

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Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 619 - 672
Target Start/End: Complemental strand, 43891813 - 43891760
Alignment:
Q  619 ttttgacaactttgaaaacaactctctctcatactcacatatatttttattctc 672  Q
    |||||| ||||||  |||||||||||||||||||| |||| | |||||||||||    
T  43891813 ttttgagaacttttgaaacaactctctctcatacttacatgtgtttttattctc 43891760  T

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Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 594 - 631
Target Start/End: Complemental strand, 45272220 - 45272183
Alignment:
Q  594 gagaaatgatatttgtacaaccaaattttgacaacttt 631  Q
    |||||||||||||||||||||||  |||||||||||||    
T  45272220 gagaaatgatatttgtacaaccactttttgacaacttt 45272183  T

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Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 590 - 631
Target Start/End: Complemental strand, 47059954 - 47059913
Alignment:
Q  590 aaatgagaaatgatatttgtacaaccaaattttgacaacttt 631  Q
    |||||||||||||||||||||||||||  |||| ||||||||    
T  47059954 aaatgagaaatgatatttgtacaaccattttttaacaacttt 47059913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 597 - 658
Target Start/End: Complemental strand, 51172373 - 51172313
Alignment:
Q  597 aaatgatatttgtacaaccaaattttgacaactttgaaaacaactctctctcatactcacat 658  Q
    ||||||||||||||||||||  |  |||||||||| ||| ||||| ||||||||||||||||    
T  51172373 aaatgatatttgtacaaccacttcgtgacaacttttaaa-caactttctctcatactcacat 51172313  T

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Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 595 - 672
Target Start/End: Complemental strand, 1523364 - 1523285
Alignment:
Q  595 agaaatgatatttgtacaaccaaattttgacaactttgaaaacaac--tctctctcatactcacatatatttttattctc 672  Q
    ||||||||||||||||||||||  |||||| ||||||  ||| |||  ||||| ||||||| |||| | |||||||||||    
T  1523364 agaaatgatatttgtacaaccactttttgataacttttgaaataactatctctgtcatacttacatgtgtttttattctc 1523285  T

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Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 590 - 630
Target Start/End: Complemental strand, 5309115 - 5309075
Alignment:
Q  590 aaatgagaaatgatatttgtacaaccaaattttgacaactt 630  Q
    |||||||||||||||||||||||||||  || |||||||||    
T  5309115 aaatgagaaatgatatttgtacaaccactttgtgacaactt 5309075  T

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Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 593 - 658
Target Start/End: Original strand, 32821634 - 32821700
Alignment:
Q  593 tgagaaatgatatttgtacaaccaaattttgacaactttgaaaacaa--ctctctctcatactcacat 658  Q
    ||||||||||||||||||||||||  || ||||||||||  ||||||   ||||||||||||||||||    
T  32821634 tgagaaatgatatttgtacaaccactttgtgacaacttt-taaacaattttctctctcatactcacat 32821700  T

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Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 595 - 631
Target Start/End: Original strand, 51571416 - 51571452
Alignment:
Q  595 agaaatgatatttgtacaaccaaattttgacaacttt 631  Q
    ||||||||||||||||||||||  |||||||||||||    
T  51571416 agaaatgatatttgtacaaccactttttgacaacttt 51571452  T

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Target: scaffold1625 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold1625
Description:

Target: scaffold1625; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 598 - 672
Target Start/End: Complemental strand, 848 - 772
Alignment:
Q  598 aatgatatttgtacaaccaaattttgacaactttgaaaacaac--tctctctcatactcacatatatttttattctc 672  Q
    |||||||||||||||| ||  |||||||||||||  |||||||  |||||||||||||||||| | |||| ||||||    
T  848 aatgatatttgtacaatcattttttgacaacttttgaaacaaccatctctctcatactcacatgtgttttaattctc 772  T

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Target: scaffold0392 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0392
Description:

Target: scaffold0392; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 594 - 669
Target Start/End: Complemental strand, 12319 - 12243
Alignment:
Q  594 gagaaatgatatttgtacaaccaaattttgacaactttg-aaaacaactctctctcatactcacatatatttttatt 669  Q
    |||||||||||||||| |||| |  |||| ||||||||  ||||||||||||||| |||||||||| | ||||||||    
T  12319 gagaaatgatatttgtgcaactactttttaacaactttttaaaacaactctctcttatactcacatgtgtttttatt 12243  T

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Target: scaffold0054 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 594 - 631
Target Start/End: Complemental strand, 31660 - 31623
Alignment:
Q  594 gagaaatgatatttgtacaaccaaattttgacaacttt 631  Q
    |||||||||||||||||||||||  |||||||||||||    
T  31660 gagaaatgatatttgtacaaccattttttgacaacttt 31623  T

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Target: scaffold0049 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 594 - 658
Target Start/End: Complemental strand, 72240 - 72177
Alignment:
Q  594 gagaaatgatatttgtacaaccaaattttgacaactttgaaaacaactctctctcatactcacat 658  Q
    |||||||||||||||||||||||  || | ||||||||  | |||||| ||||||||||||||||    
T  72240 gagaaatgatatttgtacaaccattttgtaacaacttt-tagacaactttctctcatactcacat 72177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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