View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5794_1D_high_9 (Length: 287)
Name: NF5794_1D_high_9
Description: NF5794_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5794_1D_high_9 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 22 - 287
Target Start/End: Original strand, 7368077 - 7368342
Alignment:
| Q |
22 |
cacacatagaagtttcttcctattttctttgtttctaatgtattagagtatataatcactctcaataagttagttataggctgttcgttaagaataacaa |
121 |
Q |
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| T |
7368077 |
cacacatagaagtttcttcctattttctttgtttctaatgtattagagtatataatcactctcaataagttagttataggttgctcgttaagaataacaa |
7368176 |
T |
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| Q |
122 |
accaactaaactaacaattttaatgcgatccttccaagtttcaaacatattccttatcatataagttcgatatctcattgatgatgtgtattttttaata |
221 |
Q |
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| T |
7368177 |
accaactaaactaacaattttaatgcgatccttccaagtttcaaacatattccttgtcatataagttcgatatctcattgatgatgtgtattttttaata |
7368276 |
T |
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| Q |
222 |
gagaaagtgtaactcttactaagtaatgaagctaagtttcataccaaaatgtacatttcgtttctc |
287 |
Q |
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| T |
7368277 |
gagaaagtgtaactcttactaagtaatgaagctaagtttcataccaaaatgcacatttcgtttctc |
7368342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 33 - 142
Target Start/End: Original strand, 7377088 - 7377196
Alignment:
| Q |
33 |
gtttcttcctattttctttgtttctaatgtattagagtatataatcactctcaataagttagttataggctgttcgttaagaataacaaaccaactaaac |
132 |
Q |
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||||||||||||||||| ||||| |||| |||||||||||| |||| ||||||||| ||| ||| || ||| |||||||||||||||| |||||||| |
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| T |
7377088 |
gtttcttcctattttctctgtttttaat-tattagagtataggatcagtctcaataaattaattacagttagtttgttaagaataacaaactaactaaac |
7377186 |
T |
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| Q |
133 |
taacaatttt |
142 |
Q |
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| T |
7377187 |
tagcaatttt |
7377196 |
T |
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