View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5794_1D_low_10 (Length: 295)
Name: NF5794_1D_low_10
Description: NF5794_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5794_1D_low_10 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 23 - 232
Target Start/End: Original strand, 9222933 - 9223142
Alignment:
| Q |
23 |
gtatattcacaccggcgttcagaggagcgagaattttgctggaatttcttctctccgatcggtttacgatgcgattccggcgaacgtgaaggagaatcta |
122 |
Q |
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| T |
9222933 |
gtatattcacaccggcgttcagaggagcgagaattttgctggaatttcttctctccgatcggtttacgatgcgattccggcgaacgtgaaggagaatcta |
9223032 |
T |
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| Q |
123 |
gaagctgtttattttattcatcctggtttacaagctcgcctttttctcgctacgtttggccgttttctcttcaacgctgggtaagaaacgatgaattttt |
222 |
Q |
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| T |
9223033 |
gaagctgtttattttattcatcctggtttacaagctcgcctttttctcgctacgtttggccgttttctcttcaacgctgggtaagaaacgatgaattttt |
9223132 |
T |
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| Q |
223 |
catgttaatg |
232 |
Q |
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| T |
9223133 |
cacgttaatg |
9223142 |
T |
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Target: chr7 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 244 - 295
Target Start/End: Complemental strand, 43628464 - 43628413
Alignment:
| Q |
244 |
ctcttactaatttaaaattcttaataaaactattaagaaattcgttaagaag |
295 |
Q |
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| T |
43628464 |
ctcttactaatttaaaattcttaataaaactattaagaaattcgttaagaag |
43628413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 23 - 89
Target Start/End: Original strand, 51685028 - 51685094
Alignment:
| Q |
23 |
gtatattcacaccggcgttcagaggagcgagaattttgctggaatttcttctctccgatcggtttac |
89 |
Q |
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| T |
51685028 |
gtatattcacaccggtgttcagaggagtgagaattttgccggaatttcttctctctgatcggtttac |
51685094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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