View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5794_1D_low_14 (Length: 284)
Name: NF5794_1D_low_14
Description: NF5794_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5794_1D_low_14 |
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| [»] scaffold0083 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 13 - 278
Target Start/End: Original strand, 11472556 - 11472821
Alignment:
| Q |
13 |
tgaaacaagaggcacacatgcatatattcccaacccttatggcatagaagttggtaatcctgaagaaattccaaaagggtacgtggaaaaatggttaatt |
112 |
Q |
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|||||||||||||||| || |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11472556 |
tgaaacaagaggcacaaatacatatattcctgacccttatggcatagaagttggtaatcctgaagaaattccaaaagggtacgtggaaaaatggttaatt |
11472655 |
T |
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| Q |
113 |
aatgttcatgctattgatactaggggtgtggaagatagactggggtgtattgagtgtaagtgtgacttgtataatgttaaaaaggatgaaaatggaaaaa |
212 |
Q |
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| T |
11472656 |
aatgttcatgctattgataccaggggtgtggaagatagaatggggtgtattgagtgtaagtgtgatttgtataatgttacaaaggatgaaaatggaaaaa |
11472755 |
T |
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| Q |
213 |
tattgagtccaaattataaggggggattgcaatgttgtcctaataatagtaagtgtaagctgagta |
278 |
Q |
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| T |
11472756 |
tattgagtccaaattataaggggggattgcaatgttgtcctgataatagtaagtgtaagttgagta |
11472821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 13 - 278
Target Start/End: Original strand, 11478948 - 11479213
Alignment:
| Q |
13 |
tgaaacaagaggcacacatgcatatattcccaacccttatggcatagaagttggtaatcctgaagaaattccaaaagggtacgtggaaaaatggttaatt |
112 |
Q |
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|||||||||||||||| || |||||||||| | |||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||| |
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| T |
11478948 |
tgaaacaagaggcacaaatacatatattcctcaaccttatggaatagaagttggtaatcatgaagaaattccaaaagggtatgtggaaaaatggttgatt |
11479047 |
T |
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| Q |
113 |
aatgttcatgctattgatactaggggtgtggaagatagactggggtgtattgagtgtaagtgtgacttgtataatgttaaaaaggatgaaaatggaaaaa |
212 |
Q |
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| T |
11479048 |
aatgttcatgctattgatactaggggtgtagaagatagaatggggtgtattgagtgtaagtgtgatttgtataatgttacaaaggatgaaaatggaaaaa |
11479147 |
T |
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| Q |
213 |
tattgagtccaaattataaggggggattgcaatgttgtcctaataatagtaagtgtaagctgagta |
278 |
Q |
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| T |
11479148 |
tattgagtccaaattataaggggggattgcaatgttgtcctgataatagtaagtgtaagctgagta |
11479213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 13 - 278
Target Start/End: Original strand, 11485219 - 11485482
Alignment:
| Q |
13 |
tgaaacaagaggcacacatgcatatattcccaacccttatggcatagaagttggtaatcctgaagaaattccaaaagggtacgtggaaaaatggttaatt |
112 |
Q |
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|||||||||||||||| || |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |
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| T |
11485219 |
tgaaacaagaggcacaaatacatatattcctgacccttatggcatagaagttggtaatcctgaagaaattccaaaagggtatgtggaaaaatggtttatt |
11485318 |
T |
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| Q |
113 |
aatgttcatgctattgatactaggggtgtggaagatagactggggtgtattgagtgtaagtgtgacttgtataatgttaaaaaggatgaaaatggaaaaa |
212 |
Q |
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| T |
11485319 |
aatgttcatgctattgatacta--ggtgtagaagatagaatggggtgtactgagtgtaagtgtgatttgtatggtgttacaaaggatgaaaatggagaag |
11485416 |
T |
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| Q |
213 |
tattgagtccaaattataaggggggattgcaatgttgtcctaataatagtaagtgtaagctgagta |
278 |
Q |
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| T |
11485417 |
ctttgagtccaaattataaaggaggattgcaatgttgtcctgataatagtaagtgtaagctgagta |
11485482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 13 - 191
Target Start/End: Original strand, 11462372 - 11462550
Alignment:
| Q |
13 |
tgaaacaagaggcacacatgcatatattcccaacccttatggcatagaagttggtaatcctgaagaaattccaaaagggtacgtggaaaaatggttaatt |
112 |
Q |
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|||||| ||||||||| || |||||||||| |||||||||| ||||| ||||||||||| | ||||||| |||||||| | ||||||||| | || |
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| T |
11462372 |
tgaaactagaggcacagatacatatattcctgacccttatggagtagaaattggtaatccttcacaaattcctaaagggtatgatgaaaaatggatgatc |
11462471 |
T |
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| Q |
113 |
aatgttcatgctattgatactaggggtgtggaagatagactggggtgtattgagtgtaagtgtgacttgtataatgtta |
191 |
Q |
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| T |
11462472 |
aatgtccatgcaattgatacaaggggtgtggaagatataatggggtgtattgagtgtaaatgtgacctatataatgtta |
11462550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0083 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: scaffold0083
Description:
Target: scaffold0083; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 13 - 276
Target Start/End: Original strand, 47322 - 47585
Alignment:
| Q |
13 |
tgaaacaagaggcacacatgcatatattcccaacccttatggcatagaagttggtaatcctgaagaaattccaaaagggtacgtggaaaaatggttaatt |
112 |
Q |
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|||||||||||||||| || |||||||||| |||||||||| ||||||||||||||||| | |||||||||||||| || || || |||||||| || |
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| T |
47322 |
tgaaacaagaggcacaaatacatatattccagacccttatggtatagaagttggtaatccagctgaaattccaaaaggttatgtagagaaatggttgatg |
47421 |
T |
|
| Q |
113 |
aatgttcatgctattgatactaggggtgtggaagatagactggggtgtattgagtgtaagtgtgacttgtataatgttaaaaaggatgaaaatggaaaaa |
212 |
Q |
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||| |||||| ||||||||| ||||||||||||||||| |||| |||||||| || | |||||| | |||||||||| || ||||||||||| | |
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| T |
47422 |
aatattcatgttattgatacaaggggtgtggaagataggatgggatgtattgattgcagatgtgacctatataatgttactaaagatgaaaatggtgatg |
47521 |
T |
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| Q |
213 |
tattgagtccaaattataaggggggattgcaatgttgtcctaataatagtaagtgtaagctgag |
276 |
Q |
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| T |
47522 |
ctttgagtccaaattataaagggggtttgcaatgttgtcctgataacactaagtgcaagctgag |
47585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 14 - 276
Target Start/End: Original strand, 21546654 - 21546916
Alignment:
| Q |
14 |
gaaacaagaggcacacatgcatatattcccaacccttatggcatagaagttggtaatcctgaagaaattccaaaagggtacgtggaaaaatggttaatta |
113 |
Q |
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||||||||| ||||| || |||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||| ||||| |||||||| || | |
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| T |
21546654 |
gaaacaagaagcacaaatacatatattccagacccttatggtatagaagttggtaatcctgctgaaattccaaaagggtatgtggagaaatggttgatca |
21546753 |
T |
|
| Q |
114 |
atgttcatgctattgatactaggggtgtggaagatagactggggtgtattgagtgtaagtgtgacttgtataatgttaaaaaggatgaaaatggaaaaat |
213 |
Q |
| |
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|||||||||| |||||||| ||||||||||| || | |||| ||||||||||| |||||| | || ||||| | ||| ||||||||||| || |
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| T |
21546754 |
atgttcatgcaattgatacgaggggtgtggatgaccgggtgggatgtattgagtgctcatgtgacctatacaatgtcacaaaagatgaaaatggtaatgc |
21546853 |
T |
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| Q |
214 |
attgagtccaaattataaggggggattgcaatgttgtcctaataatagtaagtgtaagctgag |
276 |
Q |
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| T |
21546854 |
tttgagtccaaattataaagggggtttgcaatgttgccctgataatagtaagtgcaagatgag |
21546916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 65 - 132
Target Start/End: Complemental strand, 38227269 - 38227202
Alignment:
| Q |
65 |
ggtaatcctgaagaaattccaaaagggtacgtggaaaaatggttaattaatgttcatgctattgatac |
132 |
Q |
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|||||||||||||| |||||| |||||| | ||| |||||||| ||||||||||||| |||||||| |
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| T |
38227269 |
ggtaatcctgaagagattccacaagggtttgaggataaatggttgcttaatgttcatgccattgatac |
38227202 |
T |
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