View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5794_1D_low_19 (Length: 246)
Name: NF5794_1D_low_19
Description: NF5794_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5794_1D_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 7368608 - 7368829
Alignment:
| Q |
1 |
aaaatacaatatgtttcatcaataaaaatttgcccgttttgtgtaatttttgttgcctaggtaaacccattctaatccttttgaagttattcatgctgat |
100 |
Q |
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| T |
7368608 |
aaaatacagtatgtttcatcaa-aaaaatttgcccgttttgtgtaatgtttgttgcctaggtaaacccattctaatccttttgaagttattcatgctgat |
7368706 |
T |
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| Q |
101 |
ttatggggtccttcacccctgccctcttcaagtttctacaactattgtattttctttgtagacacatttactaaatgcacttgtatctatttactccata |
200 |
Q |
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| T |
7368707 |
ttatggggtccttcacccctgccctcttcaagtttctaaaactattatattttctttgtagacacatttactaaatgcacttgtatctatttactccata |
7368806 |
T |
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| Q |
201 |
tttctcagatttatcccattgac |
223 |
Q |
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|||||||||||| |||||||||| |
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| T |
7368807 |
tttctcagatttttcccattgac |
7368829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 138 - 192
Target Start/End: Original strand, 7377476 - 7377529
Alignment:
| Q |
138 |
acaactattgtattttctttgtagacacatttactaaatgcacttgtatctattt |
192 |
Q |
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|||||||||||||||||||| | ||||||||| |||||| ||||||||||||||| |
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| T |
7377476 |
acaactattgtattttctttcttgacacattttctaaat-cacttgtatctattt |
7377529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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