View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5794_1D_low_2 (Length: 665)
Name: NF5794_1D_low_2
Description: NF5794_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5794_1D_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 580; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 580; E-Value: 0
Query Start/End: Original strand, 36 - 643
Target Start/End: Original strand, 28609384 - 28609991
Alignment:
| Q |
36 |
aacctgtgagcatcgagttccatgaaaccgagtctctaaaatgcatcttattaaaaatcttcctcgccttcacgatgtcaccacacttagaatacatgtc |
135 |
Q |
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| T |
28609384 |
aacccgtgagcatcgagttccacgaaactgagtctctaaaatgcatcttattaaaaatcttcctcgccttcacgatgtcaccacacttagaatacatgtc |
28609483 |
T |
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| Q |
136 |
aacaagtgcattaagcacaaacccgtcatcccaaaacccacaacgcaccacatgacgatgcacctcttccccaactcccaccaacccaattccaccacaa |
235 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
28609484 |
aacaagtgcattaagcacaaacccgtcatcccaaaacccacaacgcaccacatgacgatgcacctcttccccaacacccaccaacccaattccaccacaa |
28609583 |
T |
|
| Q |
236 |
actttaagaacacgaggaaatgtgaaaatatctggttcaacaccctcttccaccatttgaaaataaagcgcaatagcatcatcataaagacccatctctg |
335 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28609584 |
actttaagaacacgaggaaatgtgaaaatatctggttcaacaccctcttccaccatttgaaaataaagcgcaatagcatcatcataaagacccatctctg |
28609683 |
T |
|
| Q |
336 |
catatccagatatcaaggaattccacggaaacgcatacatatccctcttagtcatttgatcaaacaagtcatgtgcatcatccatatacccaaatgaagc |
435 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28609684 |
catatccagatatcaacgaattccacggaaacgcatacatatccctcttagtcatttgatcaaacaagtcatgtgcatcatccatatacccaaatgaagc |
28609783 |
T |
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| Q |
436 |
atacaacctaacaagtttagaacttattccaacatttctatgcaaaagggctggtgggataagacggtgaagccggataccatgatgaatagctccgaaa |
535 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |
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| T |
28609784 |
atacaacctaacaagtttagaacttattccaacatttctatgcaaaagggctggtgggataagacggtgaagccagataccgtgatgaatagctccgaaa |
28609883 |
T |
|
| Q |
536 |
cggtaacaagtttctaacaaagaagcataaatttcagggtcaattttgatgcctttctccaatgaagcttcaaggtcattgagaacttgttcaagtgctt |
635 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28609884 |
cggtaacaagtttctaacaaagaagcataaatttcagggtcaattttgatgcctttctccaatgaagcttcaaggtcattgagaacttgttcaagtgctt |
28609983 |
T |
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| Q |
636 |
gaaatttg |
643 |
Q |
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| T |
28609984 |
gaaatttg |
28609991 |
T |
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