View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5794_1D_low_21 (Length: 245)
Name: NF5794_1D_low_21
Description: NF5794_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5794_1D_low_21 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 6 - 239
Target Start/End: Complemental strand, 32803089 - 32802856
Alignment:
| Q |
6 |
gtgttagatatataatattataattcacatgttcatatatctaaagggactatttgttgttttggtgatacatttttgcagtttataacatttggatttg |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32803089 |
gtgttagatatataatattataattcacatgttcatatatctaaagggactatttgttgttttggtgatacatttttgcagtttataacatttggatttg |
32802990 |
T |
|
| Q |
106 |
cttgcactcctttatattttgtgtgggagaaatttcttggagtacatgaaaccaaaagtttgctcaaaagggcattggttagacttccagttgtgattcc |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32802989 |
cttgcactcctttatattttgtgtgggagaaatttcttggagtacatgaaaccaaaagtttgctcaaaagggcattggttagacttccagttgtgattcc |
32802890 |
T |
|
| Q |
206 |
aatatggtttctggcaataatattcccattcttt |
239 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
32802889 |
aatatggtttctggcaataatattcccattcttt |
32802856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 81 - 137
Target Start/End: Original strand, 28006488 - 28006544
Alignment:
| Q |
81 |
ttgcagtttataacatttggatttgcttgcactcctttatattttgtgtgggagaaa |
137 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||| || ||||| ||||||||||||||| |
|
|
| T |
28006488 |
ttgcagtttataacatttgggtttgcatgcacaccattatactttgtgtgggagaaa |
28006544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 136
Target Start/End: Original strand, 4535844 - 4535898
Alignment:
| Q |
82 |
tgcagtttataacatttggatttgcttgcactcctttatattttgtgtgggagaa |
136 |
Q |
| |
|
||||||| || |||||||| ||||| || ||||| |||||||||||||||||||| |
|
|
| T |
4535844 |
tgcagttcatcacatttgggtttgcatgtactccattatattttgtgtgggagaa |
4535898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 137
Target Start/End: Original strand, 35324445 - 35324501
Alignment:
| Q |
81 |
ttgcagtttataacatttggatttgcttgcactcctttatattttgtgtgggagaaa |
137 |
Q |
| |
|
||||||||||| || |||||||||||||| || || || || ||||||||||||||| |
|
|
| T |
35324445 |
ttgcagtttatcacctttggatttgcttgtacaccattgtactttgtgtgggagaaa |
35324501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University