View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5794_1D_low_22 (Length: 243)
Name: NF5794_1D_low_22
Description: NF5794_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5794_1D_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-128; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-128
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 45896756 - 45896518
Alignment:
| Q |
1 |
tttttataattattggagtagcgttgctgacggtagcttgttcgcggtgtcttaggcctgaaatagatcactcgccaatgacaagtattgattcaaacaa |
100 |
Q |
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| T |
45896756 |
tttttataattattggagtagcgttgctgacggtagcttgttcgcggtgtcttaggcctgaaatagatcactcgccgatgacaagtattgattcaaacaa |
45896657 |
T |
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| Q |
101 |
gtcccggggggaaacaatcaccgaagttgatcttgaacctaacattctggtaattgtagctggagaaaactacccaactcatttggcaaagccaagtaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
45896656 |
gtcccggggggaaacaatcaccgaagttgatcttgaacctaacattctggtaattgtagctggagaaaaccacccaactcatttggcaaagccaagtaat |
45896557 |
T |
|
| Q |
201 |
cacatcacccttaaacattagtatttgtaacaccaaact |
239 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
45896556 |
cacatcacccttaaacattagtatttgtaacaccaaact |
45896518 |
T |
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