View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5794_1D_low_23 (Length: 243)
Name: NF5794_1D_low_23
Description: NF5794_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5794_1D_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 24 - 236
Target Start/End: Original strand, 18644705 - 18644917
Alignment:
| Q |
24 |
ctggttcctcagattgtgactcgtgatgcggtgctctaaccgcatacaatgcacaaggcctgttagaacagtacttcataccaagctttcttgtcccaga |
123 |
Q |
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| T |
18644705 |
ctggttcctcagattgtgactcgtgatgcggtgctctaaccgcatacaatgcacaaggcctgttagaacagtacttcataccaagctttcttgtcccaga |
18644804 |
T |
|
| Q |
124 |
tgaccacccgacaaaaacaagatattgttctgagccttcggtaaatggagcccacacaacttggccagcgctcaaagatttgtcaattcctttgacagct |
223 |
Q |
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| T |
18644805 |
tgaccacccgacaaaaacaagatattgttctgagccttcggtaaatggagcccacacaacttggccagcgctcaaagatttgtcaattcctttgacagct |
18644904 |
T |
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| Q |
224 |
tgcacctctccac |
236 |
Q |
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||||||||||||| |
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| T |
18644905 |
tgcacctctccac |
18644917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 53 - 236
Target Start/End: Original strand, 18635486 - 18635669
Alignment:
| Q |
53 |
ggtgctctaaccgcatacaatgcacaaggcctgttagaacagtacttcataccaagctttcttgtcccagatgaccacccgacaaaaacaagatattgtt |
152 |
Q |
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| T |
18635486 |
ggtgctttaacagcatataatgcacaagccctgttatagcagtacttaataccaagttttcttgtctcatatgaccatccaacaaaaaccaaatattgtg |
18635585 |
T |
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| Q |
153 |
ctgagccttcggtaaatggagcccacacaacttggccagcgctcaaagatttgtcaattcctttgacagcttgcacctctccac |
236 |
Q |
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| T |
18635586 |
cagagccttcacttgatggagcccacacaacttggccaacactcaaagatttgtcaatgcctttgacggcttgaacctctccac |
18635669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 53 - 236
Target Start/End: Complemental strand, 15087051 - 15086868
Alignment:
| Q |
53 |
ggtgctctaaccgcatacaatgcacaaggcctgttagaacagtacttcataccaagctttcttgtcccagatgaccacccgacaaaaacaagatattgtt |
152 |
Q |
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|||||| |||| ||||| | |||||||| ||||||| | |||||||| |||||||| ||||||||| || ||||||| || |||||||| | ||||||| |
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| T |
15087051 |
ggtgctttaacagcatatactgcacaagccctgttatagcagtacttaataccaagttttcttgtctcatatgaccatccaacaaaaaccaaatattgtg |
15086952 |
T |
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| Q |
153 |
ctgagccttcggtaaatggagcccacacaacttggccagcgctcaaagatttgtcaattcctttgacagcttgcacctctccac |
236 |
Q |
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| T |
15086951 |
cagagccttcacttgatggagcccacacaacttggccaacactcaaaaatctgtcaatgcctttgacggcttgaacctctccac |
15086868 |
T |
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